RNA id: TU2679461


Basic Information

Item Value
RNA id TU2679461
length 395
lncRNA type intronic
GC content 0.50
exon number 2
gene id G2340123
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1126295 ~ 1128695 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

cctctctctcagtacagtCTCAGGTTGTTGACGtatcccatcatcctctctctcagtacagtCTCAGGTTGTTGACGtatcccatcatcctctctctcagtacagtCTCAGGTTCTTGACGtatcccatcatcctctctctcagtacagtCTCAGGTTGTTGACGTATCCCATCATCCAAATGTTCCATTTAAAGTCGAGACCTCGTCTTTGCCCAGAATGTCTCCCCCCACCCCCGCCCCCTCCTCTTCACTAGTTGACCCCTATAAGGTAGGGTTAACTGAGACCTGTGACCTAGGGTTAGTACTGTGTCAGCAGTgtaacataacccctctacacggctggctgacccagcatcagtccagtaacctagtccctcagtagagtaccataacc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679453 lncRNA upstream 1446 1119476 ~ 1124849 (+) True G2340119
TU2679457 lncRNA upstream 2457 1121799 ~ 1123838 (+) False G2340121
TU2679458 lncRNA upstream 2457 1122840 ~ 1123838 (+) True G2340121
TU2679439 lncRNA upstream 7326 1116943 ~ 1118969 (+) False G2340118
TU2679450 lncRNA upstream 7326 1116943 ~ 1118969 (+) False G2340118
TU2679463 lncRNA downstream 3085 1131780 ~ 1132281 (+) True G2340125
TU2679464 lncRNA downstream 7318 1136013 ~ 1136342 (+) True G2340126
TU2679466 lncRNA downstream 17993 1146688 ~ 1147015 (+) True G2340128
TU2679524 lncRNA downstream 30411 1159106 ~ 1159857 (+) False G2340157
TU2679525 lncRNA downstream 30411 1159106 ~ 1159348 (+) True G2340157
XM_036972352.1 mRNA upstream 79997 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA upstream 79997 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA upstream 79997 979594 ~ 1046298 (+) True tpp2
XR_005041788.1 mRNA upstream 180282 945452 ~ 946013 (+) False LOC118947137
XM_036972371.1 mRNA upstream 309174 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972382.1 mRNA downstream 73342 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 73372 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA downstream 73372 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA downstream 73372 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA downstream 73465 1202160 ~ 1208674 (+) False blzf1
TU2679430 other upstream 7326 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 7326 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 153512 972479 ~ 972783 (+) True G2339955
TU2679067 other upstream 252456 871107 ~ 873839 (+) False G2339912
TU2679512 other downstream 78563 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 151200 1279895 ~ 1301250 (+) True pibf1

Expression Profile