RNA id: TU2679524


Basic Information

Item Value
RNA id TU2679524
length 752
lncRNA type antisense_over
GC content 0.52
exon number 1
gene id G2340157
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1159106 ~ 1159857 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CCAAATATTCATcacaaacatagaaaatacaccGACAAACGGCCAGAGACGCCTCGCTGAAATGATCCAAAAATATCATGGGTTTACACAGCGCCACCTTTTACACCGATGTGTATCAAACATCGTCCCTCATCATTCTAAACATCATTCAGAAAACACATCACAGTGGTTTCAGCGCctgtttattggtcacatatgtaTCCCTCTGATGACATCATCAACAAGAGACGGTTCGAGAGTTTAAAGTTGATAGTTCTCACAGTGTCTTCcttcctctgcctctccccccgcctctctttccccccctcccacctctcttaccccccctcccttctctcggTTGGCCCCTAAACACTGACTGGGCCGTTACCATGGCGACCCCGCTGTCACCGTCGCTGTCGTCCCCGGTACTGCTGCTGTCATTCTGCTCCGTCCTATTAGGGAGGAGTTTAGGTTGAGGTACTCCATTATTAGGAGGAGGAAGCACTTCTTTCCTCTGCTGGCTGGCCCCTCCCACATCCAGGTTGGCCCCTCCCATATTCTGACTAACCACTcctactttctctctttcttggcTGGCCACTCCCACATCATGGCTGGCTCTTCCCACATCCTCTTGAGCAGGCTTACTGACCTCTGCCCCCAGGAACCCCCCtgtcccctccaccacctctcccttcctctgctTTTGCTCTGACCCCTTCCCTCTTTTAGCCTTGGACGGAGAGCCAGTCCCCTCTTCTTCCTattcc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679466 lncRNA upstream 12091 1146688 ~ 1147015 (+) True G2340128
TU2679464 lncRNA upstream 22764 1136013 ~ 1136342 (+) True G2340126
TU2679463 lncRNA upstream 26825 1131780 ~ 1132281 (+) True G2340125
TU2679461 lncRNA upstream 30411 1126295 ~ 1128695 (+) True G2340123
TU2679457 lncRNA upstream 35268 1121799 ~ 1123838 (+) False G2340121
TU2679531 lncRNA downstream 12596 1172453 ~ 1172907 (+) True G2340162
TU2679535 lncRNA downstream 38637 1198494 ~ 1199135 (+) True G2340165
TU2679541 lncRNA downstream 44276 1204133 ~ 1205065 (+) True G2340171
TU2679501 lncRNA downstream 49440 1209297 ~ 1209995 (+) False G2340150
TU2679502 lncRNA downstream 49440 1209297 ~ 1209962 (+) True G2340150
XM_036972352.1 mRNA upstream 112808 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA upstream 112808 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA upstream 112808 979594 ~ 1046298 (+) True tpp2
XR_005041788.1 mRNA upstream 213093 945452 ~ 946013 (+) False LOC118947137
XM_036972371.1 mRNA upstream 341985 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972382.1 mRNA downstream 42180 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 42210 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA downstream 42210 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA downstream 42210 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA downstream 42303 1202160 ~ 1208674 (+) False blzf1
TU2679430 other upstream 40137 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 40137 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 186323 972479 ~ 972783 (+) True G2339955
TU2679067 other upstream 285267 871107 ~ 873839 (+) False G2339912
TU2679512 other downstream 47401 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 120038 1279895 ~ 1301250 (+) True pibf1

Expression Profile