RNA id: TU2679535


Basic Information

Item Value
RNA id TU2679535
length 574
lncRNA type antisense_over
GC content 0.55
exon number 2
gene id G2340165
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1198494 ~ 1199135 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTTTGATGAGGATGTAGTGGGTGGAGTCTTCTGAGAGGAGGCGTCGTGTCTCCACGCTGTGCCCCTCCCCCTGGTTGTATAGCTCCACCCCCGGGGCGTTCCCAGCACTACGGttggacatctctctctccaccccctccagacgCACGTTCAGCTTGTTCCTCTGCAGCAGTCCTGCTAGCTGGTACTGGGAGAAGTCCCCTGACCGCTGGGAGGGGGGGGTTAGggtgcatgacacacacacacacacagagagagacagtgtgtgtggtaCCTCAGGAGGTGTGTGGTACCTCAGGAGGTGTGTGGTACCTCAGGAGGTGTGTGGTACATGGTGCGTCGTCTCTTGCTGAATTCCTTCATGTCTTTAAGGATCTCATGTTTCACCTCAGGAGGCATGGCAGAAAACTCCTCAGAGTTGATGTCCACAGAGTTAGAGTCTTCAAAGAAATCCccctgacagacaggcagacagacaggcaggaaggcagacagacagacacatacgcacagacagacagatagacaggcagacaggcacatacgcacagacagacaggcagacaggcagata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679531 lncRNA upstream 25587 1172453 ~ 1172907 (+) True G2340162
TU2679524 lncRNA upstream 38637 1159106 ~ 1159857 (+) False G2340157
TU2679525 lncRNA upstream 39146 1159106 ~ 1159348 (+) True G2340157
TU2679466 lncRNA upstream 51479 1146688 ~ 1147015 (+) True G2340128
TU2679464 lncRNA upstream 62152 1136013 ~ 1136342 (+) True G2340126
TU2679541 lncRNA downstream 4998 1204133 ~ 1205065 (+) True G2340171
TU2679501 lncRNA downstream 10162 1209297 ~ 1209995 (+) False G2340150
TU2679502 lncRNA downstream 10162 1209297 ~ 1209962 (+) True G2340150
TU2679528 lncRNA downstream 11030 1210165 ~ 1210650 (+) True G2340160
TU2679549 lncRNA downstream 43339 1242474 ~ 1245824 (+) False G2340179
XM_036972352.1 mRNA upstream 152196 979593 ~ 1046298 (+) False tpp2
XM_036972353.1 mRNA upstream 152196 979593 ~ 1046298 (+) False tpp2
XM_036972354.1 mRNA upstream 152196 979594 ~ 1046298 (+) True tpp2
XR_005041788.1 mRNA upstream 252481 945452 ~ 946013 (+) False LOC118947137
XM_036972371.1 mRNA upstream 381373 812539 ~ 817121 (+) True si:ch73-41e3.7
XM_036972382.1 mRNA downstream 2902 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA downstream 2932 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA downstream 2932 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA downstream 2932 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA downstream 3025 1202160 ~ 1208674 (+) False blzf1
TU2679430 other upstream 79525 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 79525 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 225711 972479 ~ 972783 (+) True G2339955
TU2679067 other upstream 324655 871107 ~ 873839 (+) False G2339912
TU2679512 other downstream 8123 1207258 ~ 1209051 (+) True blzf1
TU2679504 other downstream 80760 1279895 ~ 1301250 (+) True pibf1

Expression Profile