RNA id: TU2679501


Basic Information

Item Value
RNA id TU2679501
length 699
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G2340150
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1209297 ~ 1209995 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggaaaacctggttcagtctgctttccaccagacactgggagatgagttcacctttcagcaagacaataaactagaacacaaggccaaaatctacactggagttgcttaccaagaagacagtgaatgttcctgagtggacgAGTTACTGCTGACCTAAATCTACTTCACAATCTatgtcaagacctgaaaatagttgagtagcaatgatcaacaaccaatttgaagaattttgaaaataataaatgggcaaatgttgcacaattcaggtgtggaaagctcttaagagatttacccagaaagcctagcagctttaatcgctgccaaaggtgcttataCAAAGTATTGACCATTAAGGTTTTcacttttgtcattatggagtattgtgtgtagatgggtgagaattatTCACGCTCTggcaaattggttgttgatcattgctagacagccatttttttttttaggtctttccatagatgttcaagtagatttaagtctaaACTATCTAGTCAGGAACATCCACTGTCTCGGTCGCAACTCTAGTGTAGATTTGATCTTGTGTTTAAGGTGTGAATACATGAGATATTTCAGCTCATTTATTTTTTCAACAcgtttgctaaaatttctaaacacattttcaccttgtcattatggagtattgtgtgtagatgggtgagataaaaaaatatatataaaaattga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679541 lncRNA upstream 4232 1204133 ~ 1205065 (+) True G2340171
TU2679535 lncRNA upstream 10162 1198494 ~ 1199135 (+) True G2340165
TU2679531 lncRNA upstream 36390 1172453 ~ 1172907 (+) True G2340162
TU2679524 lncRNA upstream 49440 1159106 ~ 1159857 (+) False G2340157
TU2679525 lncRNA upstream 49949 1159106 ~ 1159348 (+) True G2340157
TU2679528 lncRNA downstream 170 1210165 ~ 1210650 (+) True G2340160
TU2679549 lncRNA downstream 32479 1242474 ~ 1245824 (+) False G2340179
TU2679550 lncRNA downstream 32479 1242474 ~ 1249277 (+) False G2340179
TU2679552 lncRNA downstream 42341 1252336 ~ 1255859 (+) True G2340179
TU2679590 lncRNA downstream 60340 1270335 ~ 1271557 (+) True G2340195
XM_036972382.1 mRNA upstream 623 1202037 ~ 1208674 (+) False blzf1
XM_036972380.1 mRNA upstream 623 1202067 ~ 1208674 (+) False blzf1
XM_036972381.1 mRNA upstream 623 1202067 ~ 1208674 (+) False blzf1
XM_036972383.1 mRNA upstream 623 1202067 ~ 1208674 (+) False blzf1
XM_036972385.1 mRNA upstream 623 1202160 ~ 1208674 (+) False blzf1
XM_036972351.1 mRNA downstream 6082 1216077 ~ 1299330 (+) False pibf1
XM_036972350.1 mRNA downstream 6082 1216077 ~ 1299562 (+) False pibf1
XM_036972349.1 mRNA downstream 6084 1216079 ~ 1301282 (+) False pibf1
XM_036972375.1 mRNA downstream 95996 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 143932 1353927 ~ 1354415 (+) False LOC118947132
TU2679512 other upstream 246 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 90328 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 90328 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 236514 972479 ~ 972783 (+) True G2339955
TU2679067 other upstream 335458 871107 ~ 873839 (+) False G2339912
TU2679504 other downstream 69900 1279895 ~ 1301250 (+) True pibf1

Expression Profile