RNA id: TU2679550


Basic Information

Item Value
RNA id TU2679550
length 277
lncRNA type intronic
GC content 0.41
exon number 2
gene id G2340179
representative False

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1242474 ~ 1255859 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtagactttacagtgaaatgctgaatacaacaggtgtagtagccctcacagtgaaatgctgaatacaacaggtgtagtagacctcacagtgaaatgctgaatacaacaggtgtagtagacatcacagtgaaatgctgaatacaacaggtgtagtagccctcacagtgaaatgctgaatacaacaggtgtagtagaccttacagtgaaatgctgaatacaacaggtgtagtaga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679528 lncRNA upstream 31824 1210165 ~ 1210650 (+) True G2340160
TU2679501 lncRNA upstream 32479 1209297 ~ 1209995 (+) False G2340150
TU2679502 lncRNA upstream 32512 1209297 ~ 1209962 (+) True G2340150
TU2679541 lncRNA upstream 37409 1204133 ~ 1205065 (+) True G2340171
TU2679535 lncRNA upstream 43339 1198494 ~ 1199135 (+) True G2340165
TU2679552 lncRNA downstream 3059 1252336 ~ 1255859 (+) True G2340179
TU2679590 lncRNA downstream 21058 1270335 ~ 1271557 (+) True G2340195
TU2679591 lncRNA downstream 30819 1280096 ~ 1280849 (+) False G2340196
TU2679592 lncRNA downstream 30819 1280096 ~ 1280993 (+) True G2340196
TU2679594 lncRNA downstream 39166 1288443 ~ 1288976 (+) True G2340198
XM_036972380.1 mRNA upstream 33800 1202067 ~ 1208674 (+) False blzf1
XM_036972375.1 mRNA downstream 56714 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 104650 1353927 ~ 1354415 (+) False LOC118947132
XM_036972359.1 mRNA downstream 130991 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 130991 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 130991 1380268 ~ 1427870 (+) False lmo7b
TU2679512 other upstream 33423 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 123505 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 123505 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 269691 972479 ~ 972783 (+) True G2339955
TU2679071 other upstream 368635 871107 ~ 873839 (+) False G2339912
TU2679504 other downstream 30618 1279895 ~ 1301250 (+) True pibf1

Expression Profile