RNA id: TU2679590


Basic Information

Item Value
RNA id TU2679590
length 233
lncRNA type intronic
GC content 0.42
exon number 2
gene id G2340195
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1270335 ~ 1271557 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTCTAGTTACACTGCAGGTGGTTTGTAGTCAGTGATAAATATGGAACCATTTCCTGTCCAGTATCACTGCAGGTGGTTTGTAGTCAGTGATAAATATGGAACCATTTCCTGTCCAGTATCACTGCAGGTGGTTTGTAGTCAGTGATAAATATGGAACCATTTCCTGTCCAGTATCACTGCAGGTAGTTTGTAGTCAGTGATACACAAGGCCAATAGAACATAGAGTAAGGAga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679552 lncRNA upstream 14476 1252336 ~ 1255859 (+) True G2340179
TU2679550 lncRNA upstream 21058 1242474 ~ 1249277 (+) False G2340179
TU2679549 lncRNA upstream 24511 1242474 ~ 1245824 (+) False G2340179
TU2679528 lncRNA upstream 59685 1210165 ~ 1210650 (+) True G2340160
TU2679501 lncRNA upstream 60340 1209297 ~ 1209995 (+) False G2340150
TU2679591 lncRNA downstream 8539 1280096 ~ 1280849 (+) False G2340196
TU2679592 lncRNA downstream 8539 1280096 ~ 1280993 (+) True G2340196
TU2679594 lncRNA downstream 16886 1288443 ~ 1288976 (+) True G2340198
TU2679595 lncRNA downstream 18245 1289802 ~ 1292166 (+) True G2340199
TU2679600 lncRNA downstream 30643 1302200 ~ 1302756 (+) True G2340202
XM_036972380.1 mRNA upstream 61661 1202067 ~ 1208674 (+) False blzf1
XM_036972375.1 mRNA downstream 34434 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 82370 1353927 ~ 1354415 (+) False LOC118947132
XM_036972359.1 mRNA downstream 108711 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 108711 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 108711 1380268 ~ 1427870 (+) False lmo7b
TU2679512 other upstream 61284 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 151366 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 151366 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 297552 972479 ~ 972783 (+) True G2339955
TU2679071 other upstream 396496 871107 ~ 873839 (+) False G2339912
TU2679504 other downstream 8338 1279895 ~ 1301250 (+) True pibf1

Expression Profile