RNA id: TU2679592


Basic Information

Item Value
RNA id TU2679592
length 453
lncRNA type intronic
GC content 0.50
exon number 2
gene id G2340196
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1280096 ~ 1280993 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gtaacacatcacacaggacagatctctgaggaggtatcacacaggacagatctctgaggaggtaacacacaggacagatctcTGAGGAGGCAACACATCACACAGGACAGATCTCTGAGGAGgtaacacacaggacagatctctgaggaggtaacacacacaggacagatctctgaggaggtaacacacaggacagatctctgaggaggtaacacacaggacagatctctgaggaggtaacacacaggacagatctctgaggaggtaacacacgggacagatctctgaggaggtaacacatcacacaggacagatctctgaggaggtatcacacaggacagatctctgaggagataacacacaggacagatctctgaggaggtaacacacaggacagatctctgaggaggtaacacatcacacaggacagatctctgaggaggtatcacacag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679590 lncRNA upstream 8539 1270335 ~ 1271557 (+) True G2340195
TU2679552 lncRNA upstream 24237 1252336 ~ 1255859 (+) True G2340179
TU2679550 lncRNA upstream 30819 1242474 ~ 1249277 (+) False G2340179
TU2679549 lncRNA upstream 34272 1242474 ~ 1245824 (+) False G2340179
TU2679528 lncRNA upstream 69446 1210165 ~ 1210650 (+) True G2340160
TU2679594 lncRNA downstream 7450 1288443 ~ 1288976 (+) True G2340198
TU2679595 lncRNA downstream 8809 1289802 ~ 1292166 (+) True G2340199
TU2679600 lncRNA downstream 21207 1302200 ~ 1302756 (+) True G2340202
TU2679601 lncRNA downstream 22390 1303383 ~ 1303812 (+) False G2340203
TU2679602 lncRNA downstream 22390 1303383 ~ 1303812 (+) True G2340203
XM_036972380.1 mRNA upstream 71422 1202067 ~ 1208674 (+) False blzf1
XM_036972375.1 mRNA downstream 24998 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 72934 1353927 ~ 1354415 (+) False LOC118947132
XM_036972359.1 mRNA downstream 99275 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 99275 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 99275 1380268 ~ 1427870 (+) False lmo7b
TU2679512 other upstream 71045 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 161127 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 161127 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 307313 972479 ~ 972783 (+) True G2339955
TU2679071 other upstream 406257 871107 ~ 873839 (+) False G2339912

Expression Profile