RNA id: TU2679594


Basic Information

Item Value
RNA id TU2679594
length 434
lncRNA type intronic
GC content 0.52
exon number 2
gene id G2340198
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1288443 ~ 1288976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CTGTCACCCTTTTTATCTTTCGTGTCTTGGTCACTTCCTGTCTGCACTGATCCCTGTTTCAACAAGCCTCTACACTGTAGTGGTGTAGTACAGTGTATACCCCACAGCTCAACAAGCCTCTACACTGTAGTGGTGTAGTACAGTATATACCCCACAGCCCAACAAGCCTCTACACTGTAGTGGTGTAGTACAGTAGATACCCCACAGCCCAACAAGCCTCTACACTGTAGTGGTGTAGTACAGTATATACCCCACAGCCCAACAAGCCTCAGTCTGTTGGTTCAGTCTGTTGGCCTGAGGCCTGTTCAGTCGGTTCAGTCTGTTGGCCTGAGGCCTGTTCAGTCGGTTCAGTCGGTTGGCCTGAGGCCTGTTCAGTCGGTTCAGTCTGTTGGCCTGAGGCCTGTTCAGTCGGTTCAGTCTGTTGGCCTTAGGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679592 lncRNA upstream 7450 1280096 ~ 1280993 (+) True G2340196
TU2679591 lncRNA upstream 7594 1280096 ~ 1280849 (+) False G2340196
TU2679590 lncRNA upstream 16886 1270335 ~ 1271557 (+) True G2340195
TU2679552 lncRNA upstream 32584 1252336 ~ 1255859 (+) True G2340179
TU2679550 lncRNA upstream 39166 1242474 ~ 1249277 (+) False G2340179
TU2679595 lncRNA downstream 826 1289802 ~ 1292166 (+) True G2340199
TU2679600 lncRNA downstream 13224 1302200 ~ 1302756 (+) True G2340202
TU2679601 lncRNA downstream 14407 1303383 ~ 1303812 (+) False G2340203
TU2679602 lncRNA downstream 14407 1303383 ~ 1303812 (+) True G2340203
TU2679610 lncRNA downstream 36193 1325169 ~ 1326862 (+) True G2340209
XM_036972380.1 mRNA upstream 79769 1202067 ~ 1208674 (+) False blzf1
XM_036972375.1 mRNA downstream 17015 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 64951 1353927 ~ 1354415 (+) False LOC118947132
XM_036972359.1 mRNA downstream 91292 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 91292 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 91292 1380268 ~ 1427870 (+) False lmo7b
TU2679512 other upstream 79392 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 169474 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 169474 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 315660 972479 ~ 972783 (+) True G2339955
TU2679071 other upstream 414604 871107 ~ 873839 (+) False G2339912

Expression Profile