RNA id: TU2679595


Basic Information

Item Value
RNA id TU2679595
length 890
lncRNA type intronic
GC content 0.46
exon number 2
gene id G2340199
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1289802 ~ 1292166 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CGGTTGGCCTGAGGCCTGTTCAGTCGGTTCAGTCTGTTGGCCTGAGGCCTGTTCAGGTGGTTCAGTCTGTTGGCCTGAGGCCTGTTCAGTCGGTTCAGTCTGTTggcactgtacagtacagagagagagaggcttgttTGTAGAAtcacactgtacagtacagagagagagaggcttgttTGTAGAAtcacactgtacagtacagagagagagaggctctctCTAATGTTGACCCCCCTGTACATCctactatacactgagtataacaaCACCTCTCTAATGTTGACCCCCCCTGTACATCCTACTATACACTGAGAATAACAACACCTCTCTAATGTTGACCCCCCCTGTACATCctactatacactgagtataacaaCACCTCTCTAATGTTGACCCCCCCCTGTACATCctactatacactgagtataacaaCACCTCTCTAATGTTGACCCCCCTGTACATCctactatacactgagtataacaaCACCTCTCTAATGTTGACCCCCCTGTACATCctactatacactgagtataacaaCACCTCTCTAATGTTGACCCCCCCCTGTACATCctactatacactgagtataacaacacctctctaatgttgcccccccccctgtacatcctactatacactgagtataacaaCACCTCTCTAATGTTGACCCCCCCTGTACATCctactatacactgagtataacaaCACCTCTCTAATGTTGACCCCCCCCTGTACATCctactatacactgagtataacaaCACCTCTCTAATGTTGACCCCCCTGTACATCctactatacactgagtataacaaCACCTCTCTAATGTTGACCCCCCTGTACATCctactatacactgagtataacaaCACCTCTCTAATGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679594 lncRNA upstream 826 1288443 ~ 1288976 (+) True G2340198
TU2679592 lncRNA upstream 8809 1280096 ~ 1280993 (+) True G2340196
TU2679591 lncRNA upstream 8953 1280096 ~ 1280849 (+) False G2340196
TU2679590 lncRNA upstream 18245 1270335 ~ 1271557 (+) True G2340195
TU2679552 lncRNA upstream 33943 1252336 ~ 1255859 (+) True G2340179
TU2679600 lncRNA downstream 10034 1302200 ~ 1302756 (+) True G2340202
TU2679601 lncRNA downstream 11217 1303383 ~ 1303812 (+) False G2340203
TU2679602 lncRNA downstream 11217 1303383 ~ 1303812 (+) True G2340203
TU2679610 lncRNA downstream 33003 1325169 ~ 1326862 (+) True G2340209
TU2679515 lncRNA downstream 44735 1336901 ~ 1338030 (+) False G2340154
XM_036972380.1 mRNA upstream 81128 1202067 ~ 1208674 (+) False blzf1
XM_036972375.1 mRNA downstream 13825 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 61761 1353927 ~ 1354415 (+) False LOC118947132
XM_036972359.1 mRNA downstream 88102 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 88102 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 88102 1380268 ~ 1427870 (+) False lmo7b
TU2679512 other upstream 80751 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 170833 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 170833 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 317019 972479 ~ 972783 (+) True G2339955
TU2679071 other upstream 415963 871107 ~ 873839 (+) False G2339912

Expression Profile