RNA id: TU2679600


Basic Information

Item Value
RNA id TU2679600
length 254
lncRNA type inter_gene
GC content 0.54
exon number 2
gene id G2340202
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1302200 ~ 1302756 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GCAGTCATCTAGTAGAGGGGACAGCAGTCATCTAGTAGAGGGGACAGCAGTCATCTAGTAGAGGGGACAGCAGCTCAGGCAGTAGTTTGACTGTTAGTCATCTAGTAGAGGGGACAGCAGTCATCTCGTAGAGGGGACAGCAGCTCAGGCAGTAGAGGGGACAGCAGCTCAGGCAGTAGTTTGACTGTTAGTCATCTAGTAGAGGGGACAGCAGTCATCTCGTAGAGGGGACAGCAGCTCAGGCAGTAGAGGGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679595 lncRNA upstream 10034 1289802 ~ 1292166 (+) True G2340199
TU2679594 lncRNA upstream 13224 1288443 ~ 1288976 (+) True G2340198
TU2679592 lncRNA upstream 21207 1280096 ~ 1280993 (+) True G2340196
TU2679591 lncRNA upstream 21351 1280096 ~ 1280849 (+) False G2340196
TU2679590 lncRNA upstream 30643 1270335 ~ 1271557 (+) True G2340195
TU2679601 lncRNA downstream 627 1303383 ~ 1303812 (+) False G2340203
TU2679602 lncRNA downstream 627 1303383 ~ 1303812 (+) True G2340203
TU2679610 lncRNA downstream 22413 1325169 ~ 1326862 (+) True G2340209
TU2679515 lncRNA downstream 34145 1336901 ~ 1338030 (+) False G2340154
TU2679516 lncRNA downstream 34145 1336901 ~ 1338965 (+) True G2340154
XM_036972349.1 mRNA upstream 918 1216079 ~ 1301282 (+) False pibf1
XM_036972350.1 mRNA upstream 2638 1216077 ~ 1299562 (+) False pibf1
XM_036972351.1 mRNA upstream 2870 1216077 ~ 1299330 (+) False pibf1
XM_036972380.1 mRNA upstream 93526 1202067 ~ 1208674 (+) False blzf1
XM_036972375.1 mRNA downstream 3235 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 51171 1353927 ~ 1354415 (+) False LOC118947132
XM_036972359.1 mRNA downstream 77512 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 77512 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 77512 1380268 ~ 1427870 (+) False lmo7b
TU2679504 other upstream 950 1279895 ~ 1301250 (+) True pibf1
TU2679512 other upstream 93149 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 183231 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 183231 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 329417 972479 ~ 972783 (+) True G2339955

Expression Profile