RNA id: TU2679602


Basic Information

Item Value
RNA id TU2679602
length 294
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G2340203
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1303383 ~ 1303812 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GTTAACTCTTTCTGTGTATTGGTGGTGAAGGATCTTTAACTCTTTCTGTGTATTGGAGGTGAAGGATCGTTAACTCTTTCTGTGTATTGGTGGTGAAGGATCGTTAACTCTTTCTGTGTATTGGAGGTGAAGGATCGTTAACTCTTTCTGTGTATTGGTGGTGAAGGATCGTTAACTCTTTCTGTGTATTGGTGGTGAAGGATCGTTAACTCTTTCTGTGTATTGGTGGTGAAGGATCGTTAACTCTTTCTGTGTATTGGTGGTGAAGGATCGTTAACTTGATCTGTGTATTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679600 lncRNA upstream 627 1302200 ~ 1302756 (+) True G2340202
TU2679595 lncRNA upstream 11217 1289802 ~ 1292166 (+) True G2340199
TU2679594 lncRNA upstream 14407 1288443 ~ 1288976 (+) True G2340198
TU2679592 lncRNA upstream 22390 1280096 ~ 1280993 (+) True G2340196
TU2679591 lncRNA upstream 22534 1280096 ~ 1280849 (+) False G2340196
TU2679610 lncRNA downstream 21357 1325169 ~ 1326862 (+) True G2340209
TU2679515 lncRNA downstream 33089 1336901 ~ 1338030 (+) False G2340154
TU2679516 lncRNA downstream 33089 1336901 ~ 1338965 (+) True G2340154
TU2679614 lncRNA downstream 35318 1339130 ~ 1339338 (+) True G2340213
TU2679625 lncRNA downstream 49970 1353782 ~ 1354196 (+) True LOC118947132
XM_036972349.1 mRNA upstream 2101 1216079 ~ 1301282 (+) False pibf1
XM_036972350.1 mRNA upstream 3821 1216077 ~ 1299562 (+) False pibf1
XM_036972351.1 mRNA upstream 4053 1216077 ~ 1299330 (+) False pibf1
XM_036972385.1 mRNA upstream 94709 1202160 ~ 1208674 (+) False blzf1
XM_036972375.1 mRNA downstream 2179 1305991 ~ 1333394 (+) True klf5a
XR_005041786.1 mRNA downstream 50115 1353927 ~ 1354415 (+) False LOC118947132
XM_036972359.1 mRNA downstream 76456 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 76456 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 76456 1380268 ~ 1427870 (+) False lmo7b
TU2679504 other upstream 2133 1279895 ~ 1301250 (+) True pibf1
TU2679512 other upstream 94332 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 184414 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 184414 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 330600 972479 ~ 972783 (+) True G2339955

Expression Profile