RNA id: TU2679610


Basic Information

Item Value
RNA id TU2679610
length 853
lncRNA type intronic
GC content 0.43
exon number 2
gene id G2340209
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1325169 ~ 1326862 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gttatttcatagttttgatgtcttcactattattctacaatgtaggaaatagtaaaaataaagaaaaaccttggaatgagttgGTGTCATTTTGCCAAAGCTTTCTTTGgcgatttacaatattaacataatcAATATTAATCAATATTGTCaatgggacaacagtaacaacagtaaccaagggtcaaaataaccatacattgaacaataacaataagtatacagtagaggacatgtgcaggttggttggtctgtcagacactgtccctcatcttatgacaggcagcaatgtagtgctctgccaacccacagctctctgtgtcctcccccaactggacgggtagcctatccctcccccaacaggacgggtagcctgtccctcccccaacaggacgggtagcctgtccctcccccaacaggacgggtagcctgtcctcatcagagaggtctttgaaaggGTTTCACATTTGGGGAAATGAAACTAATTGTTATATATTCTGGTTGTTTTGTTTCGTTTTCCTGTGtcgacccttctcaatggcaaggctgtgctcactgagcctgtactgcgtcaaggtttttctaaggttttggtCAGTAACCTTGGTCAAATAGTTATCCACGGTGttctgtcgatttagggccagataggactgcattttgctttgtgtttgtgcttgtgtttccccattggtaatgtagttttgttttgactgtgttgtaatttggtttatcctgattgattggatgttctggtcctgaggcttcagtgtgttagtagaacaggttagtgaactcagccccaggacctgcTGGATTAGGTATAGATAtacaagagctgagcaaagaaaag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679601 lncRNA upstream 21357 1303383 ~ 1303812 (+) False G2340203
TU2679602 lncRNA upstream 21357 1303383 ~ 1303812 (+) True G2340203
TU2679600 lncRNA upstream 22413 1302200 ~ 1302756 (+) True G2340202
TU2679595 lncRNA upstream 33003 1289802 ~ 1292166 (+) True G2340199
TU2679594 lncRNA upstream 36193 1288443 ~ 1288976 (+) True G2340198
TU2679515 lncRNA downstream 10039 1336901 ~ 1338030 (+) False G2340154
TU2679516 lncRNA downstream 10039 1336901 ~ 1338965 (+) True G2340154
TU2679614 lncRNA downstream 12268 1339130 ~ 1339338 (+) True G2340213
TU2679625 lncRNA downstream 26920 1353782 ~ 1354196 (+) True LOC118947132
TU2679626 lncRNA downstream 30290 1357152 ~ 1357588 (+) True G2340222
XM_036972349.1 mRNA upstream 23887 1216079 ~ 1301282 (+) False pibf1
XM_036972350.1 mRNA upstream 25607 1216077 ~ 1299562 (+) False pibf1
XM_036972351.1 mRNA upstream 25839 1216077 ~ 1299330 (+) False pibf1
XM_036972385.1 mRNA upstream 116495 1202160 ~ 1208674 (+) False blzf1
XR_005041786.1 mRNA downstream 27065 1353927 ~ 1354415 (+) False LOC118947132
XM_036972359.1 mRNA downstream 53406 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 53406 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 53406 1380268 ~ 1427870 (+) False lmo7b
XM_036972360.1 mRNA downstream 53406 1380268 ~ 1427883 (+) False lmo7b
TU2679504 other upstream 23919 1279895 ~ 1301250 (+) True pibf1
TU2679512 other upstream 116118 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 206200 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 206200 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 352386 972479 ~ 972783 (+) True G2339955

Expression Profile