RNA id: TU2679516


Basic Information

Item Value
RNA id TU2679516
length 1779
lncRNA type inter_gene
GC content 0.38
exon number 3
gene id G2340154
representative True

Chromosome Information

Item Value
chromosome id NW_023493665.1
NCBI id JAAXML020000242.1
chromosome length 1484196
location 1336901 ~ 1338965 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TGTATTTTCTAACAAAAGGAAGTGAAATGTTTTCTCCTACTCTGGGCAGAGTGGTGGGACATCCTACTTAGTATTGAATGTAATACAGAAGACCACATTGACTAGTATTCATGTCAACTAACATCCTGGAGCTTCCTGTCAACTAACATCCTGGAGCTTCCTGTCAACTAACATCCTGGAGCTTCCTGTCAACTAACATCCTGGAGCTTCCTGTCACGTCGTTTCATCCTAAGTATCTCTGTGGTCTTTGATCAATTTGTatatgtcccaaatgtcaccctatatagtgcactactttagaccagaaccctatagaccctattccctatatagtgcactactttagaccagaaccctattccctatatagtgcactactttagaccagagccctatagaaccctattccctaatgtagtacactactttagaccagaaccctattccctatgtagtgcactactttagaccagagccctatagaaccctattccctatatatagtgcactactttagaccagagccctatagaaccctattccctatatatagtgcactactttagaccagggccctatagaacccgattccctatatagtgcactactttagaccagggccctatagaaccctattccctatatatagtgcactactttagtccagggcctgtagtagtgtactgtatagaGAAATAGGCTGCTAATGGATACTAGCTGATACTCTAATGAGAAGTCTTCCTGATATTTATTTAACGATACTTGGACAAGAGGGAATCCATCTTTTCCTCAGATCGGCCATTTTATTCTGTGTAACTGAAATGCCTTAATGTAAATACCTGCTCTGTAAATAAcgttttgatttaaaaaatgttttgtttatttgctcttattttgtattttttttaaaacaaaaggGCAGAACTTACAAAATGTCCGGCATCGATGCTGTGTGATTTTCTTTgtttattttaaaatattttgatGATGGTTTTGTTTTTATATTTGTAATTTGAACCTATTTTCTAGTTTCCCTTTTGGTAGAAATGAAACAAATAAATCCTAATCAAATAAAATCTTGTTGTCCATTTTTGTCTTTTACATTTTGTTGTCAtgattgaaatgtatttttactgcgaGGGTCCAACGTAGCAGACAAAGTAAGACTCTTATCCTGGCGGGTTCCCCCAATAAGTTTCTCTTGTCATCTTTTCATGCCCAAGGGTTTCCCTAAACCTCTCGTCTACCATATGTTTACGTAGCAGGAAGTGCCTCGGCTCAGCACGTTAACATGTCTGTTACCAGTTGAGTTTAGGAGTTGAACCTGTTGTGCTGGTTTGACAGGTGTCTTACTAGGATCTTGGCTCAACTTGTTATTGTCATACCACAGATCACAAGAGAGATCTTAGCGATTTAAGAAGAGATTCGGTATCCTTTGAAAAATAGATTGAAAACATGattgtgttttaaaaaaaaaagattttaaagATAGTCTTTGGCTCGTTATACCATGTTTTAATGTGACGCAAAGAGGAAGAGCCATTCCTCAGGTGAGATCTGATAACTGACTGACGTGTTCTGGAATGTTTATTATGAATCTATAAATCATTCTAGAAGCGTTTTATTCATCTGATTCAGGAGACCGAAGACTGGCTTGGTTCCAGAGGATCATTCCAGAAGCTTTACTGTGAAACATTTACCTACTGGACACCATTCCAGTTTGTCAGCCCAGTTGTCTAACCCCTCCTAGCTAGTTTTATGAACTCCCTTCACCACATG

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU2679610 lncRNA upstream 10039 1325169 ~ 1326862 (+) True G2340209
TU2679601 lncRNA upstream 33089 1303383 ~ 1303812 (+) False G2340203
TU2679602 lncRNA upstream 33089 1303383 ~ 1303812 (+) True G2340203
TU2679600 lncRNA upstream 34145 1302200 ~ 1302756 (+) True G2340202
TU2679595 lncRNA upstream 44735 1289802 ~ 1292166 (+) True G2340199
TU2679614 lncRNA downstream 165 1339130 ~ 1339338 (+) True G2340213
TU2679625 lncRNA downstream 14817 1353782 ~ 1354196 (+) True LOC118947132
TU2679626 lncRNA downstream 18187 1357152 ~ 1357588 (+) True G2340222
TU2679623 lncRNA downstream 21528 1360493 ~ 1361588 (+) True G2340219
XM_036972375.1 mRNA upstream 3507 1305991 ~ 1333394 (+) True klf5a
XM_036972349.1 mRNA upstream 35619 1216079 ~ 1301282 (+) False pibf1
XM_036972350.1 mRNA upstream 37339 1216077 ~ 1299562 (+) False pibf1
XM_036972351.1 mRNA upstream 37571 1216077 ~ 1299330 (+) False pibf1
XM_036972384.1 mRNA upstream 128227 1202171 ~ 1208674 (+) False blzf1
XR_005041786.1 mRNA downstream 14962 1353927 ~ 1354415 (+) False LOC118947132
XM_036972359.1 mRNA downstream 41303 1380268 ~ 1427870 (+) False lmo7b
XM_036972363.1 mRNA downstream 41303 1380268 ~ 1427870 (+) False lmo7b
XM_036972367.1 mRNA downstream 41303 1380268 ~ 1427870 (+) False lmo7b
XM_036972360.1 mRNA downstream 41303 1380268 ~ 1427883 (+) False lmo7b
TU2679504 other upstream 35651 1279895 ~ 1301250 (+) True pibf1
TU2679512 other upstream 127850 1207258 ~ 1209051 (+) True blzf1
TU2679430 other upstream 217932 1116943 ~ 1118969 (+) False G2340118
TU2679448 other upstream 217932 1116943 ~ 1118969 (+) False G2340118
TU2679153 other upstream 364118 972479 ~ 972783 (+) True G2339955

Expression Profile