RNA id: TCONS_00061500


Basic Information

Item Value
RNA id TCONS_00061500
length 227
lncRNA type sense_over
GC content 0.37
exon number 2
gene id XLOC_030711
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 110399 ~ 114963 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAAACTTTTAATTGGTTCCTCAAGATTGTAATTTTAGAAGTCTTATGTGCATTATAGTGTTTCGCTTCTCCTGCACTCTCCACAGACGCCTGTTCtgagagatgATGATGATGAATAAATATATCATGCTCTTTCTGCTAATCAGATTATTTCTTGATTTCTCTCCTCGAGGAACATTAGGTTAGGTCACCGCACCGAGATCTAAAGCAGAAGTATTAATATTAAAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061904 lncRNA upstream 134785 249748 ~ 252101 (-) True XLOC_030712
TCONS_00061905 lncRNA upstream 184182 299145 ~ 307137 (-) False XLOC_030713
TCONS_00061501 lncRNA upstream 184182 299145 ~ 307140 (-) True XLOC_030713
TCONS_00061502 lncRNA upstream 185915 300878 ~ 301152 (-) True XLOC_030714
TCONS_00061906 lncRNA upstream 211721 326684 ~ 337090 (-) True XLOC_030716
TCONS_00059836 mRNA upstream 200220 315183 ~ 417495 (-) False XLOC_030715
TCONS_00059837 mRNA upstream 200220 315183 ~ 417535 (-) False XLOC_030715
TCONS_00059838 mRNA upstream 203254 318217 ~ 323712 (-) True XLOC_030715
TCONS_00059842 mRNA upstream 709746 824709 ~ 825920 (-) False XLOC_030722
TCONS_00059846 mRNA upstream 883333 998296 ~ 1047504 (-) False XLOC_030727
TCONS_00059839 other upstream 347158 462121 ~ 462235 (-) True XLOC_030719
TCONS_00059840 other upstream 372896 487859 ~ 487975 (-) True XLOC_030720
TCONS_00059841 other upstream 706989 821952 ~ 822286 (-) True XLOC_030721
TCONS_00059843 other upstream 718636 833599 ~ 833933 (-) True XLOC_030723
TCONS_00059844 other upstream 721174 836137 ~ 836290 (-) True XLOC_030724

Expression Profile

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