RNA id: TCONS_00061502


Basic Information

Item Value
RNA id TCONS_00061502
length 275
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id XLOC_030714
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 300878 ~ 301152 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ggtccattagtaccaattgagcatcaacgccacagcctacctgagtattgctgctgaccatgtccatccctttatgagcacagtgtctccatcttctgatggctacttccagcaggataacgcagcatgtcataaagctcaatcatctcagactggtttcttgaacatgacgatgagttcactgtactcaaatggcctccacagtcaccagagctcaatccaatagagcagctttgggatgtggtggaacgggagattggcatcatggatgtgca

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061904 lncRNA downstream 48777 249748 ~ 252101 (-) True XLOC_030712
TCONS_00061500 lncRNA downstream 185915 110399 ~ 114963 (-) True XLOC_030711
TCONS_00061906 lncRNA upstream 25532 326684 ~ 337090 (-) True XLOC_030716
TCONS_00061503 lncRNA upstream 97153 398305 ~ 399726 (-) True XLOC_030717
TCONS_00061907 lncRNA upstream 145244 446396 ~ 450613 (-) True XLOC_030718
TCONS_00061504 lncRNA upstream 523557 824709 ~ 826807 (-) True XLOC_030722
TCONS_00061505 lncRNA upstream 620336 921488 ~ 926077 (-) True XLOC_030725
TCONS_00059835 mRNA downstream 99278 31748 ~ 201600 (-) True XLOC_030710
TCONS_00059836 mRNA upstream 14031 315183 ~ 417495 (-) False XLOC_030715
TCONS_00059837 mRNA upstream 14031 315183 ~ 417535 (-) False XLOC_030715
TCONS_00059838 mRNA upstream 17065 318217 ~ 323712 (-) True XLOC_030715
TCONS_00059842 mRNA upstream 523557 824709 ~ 825920 (-) False XLOC_030722
TCONS_00059846 mRNA upstream 697144 998296 ~ 1047504 (-) False XLOC_030727
TCONS_00059839 other upstream 160969 462121 ~ 462235 (-) True XLOC_030719
TCONS_00059840 other upstream 186707 487859 ~ 487975 (-) True XLOC_030720
TCONS_00059841 other upstream 520800 821952 ~ 822286 (-) True XLOC_030721
TCONS_00059843 other upstream 532447 833599 ~ 833933 (-) True XLOC_030723
TCONS_00059844 other upstream 534985 836137 ~ 836290 (-) True XLOC_030724

Expression Profile

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