RNA id: TCONS_00061503


Basic Information

Item Value
RNA id TCONS_00061503
length 801
lncRNA type intronic
GC content 0.51
exon number 2
gene id XLOC_030717
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 398305 ~ 399726 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GGAGAAGGTGAAGGTGCTGAAGACGCAGAACTCCGACCTGGCCTCCACCGCCGGCATCCTGAGGGAGCAGGTGGCGCAGCTCAAGCAGAAGGTGATGAACCACGTCACCAGCGGGTGCCAGATCTCCGTCAGCTCCGCCAGCATGGGCAAGGGTGGAGACAGCGGCTGCTGAGGAGTGGAGTCTCTACCCAGACctggagctctctctctctctctctctctctctctctgggagGAGGAACACCTCCATCACCATCACCTGTTGATTACCTATACATCACCTCCATCATCTGTGCTCCTTAAAACTTGCACATGCGgagtgtacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacgccctaGAGGAGGTGTGTCCCTCCTACTCACATGTTGCAACGTTGATTACACACCCGAACCCTCCCAAAGCAAATATTCCAGAACTACActgatctctctctcttacacacacacacaccctctttctctgtgtgtgtgtgtgtgtgtgtgtgttttgggggaAATGAGCGTGTATATGAGCAGATGAGACCGTGAGAAGGCTGAGTGTGTTGCTGAGGTGCTCGCTGCTATGATTAATCAGGGATGTCCTTTATTGTTGGTGTTTATTAATAATCTATAGACTCGTTAAAGAGttgtgagacacacacacacacacacacacacacacacacacacacacacacacacacacacagaagagctCTGCTTTACACCTGTATAGCTCAGCCAGTTCAGC

Function

GO:

id name namespace
GO:0035091 phosphatidylinositol binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061906 lncRNA downstream 61215 326684 ~ 337090 (-) True XLOC_030716
TCONS_00061501 lncRNA downstream 91165 299145 ~ 307140 (-) True XLOC_030713
TCONS_00061905 lncRNA downstream 91168 299145 ~ 307137 (-) False XLOC_030713
TCONS_00061502 lncRNA downstream 97153 300878 ~ 301152 (-) True XLOC_030714
TCONS_00061904 lncRNA downstream 146204 249748 ~ 252101 (-) True XLOC_030712
TCONS_00061907 lncRNA upstream 46670 446396 ~ 450613 (-) True XLOC_030718
TCONS_00061504 lncRNA upstream 424983 824709 ~ 826807 (-) True XLOC_030722
TCONS_00061505 lncRNA upstream 521762 921488 ~ 926077 (-) True XLOC_030725
TCONS_00061908 lncRNA upstream 606724 1006450 ~ 1084749 (-) True XLOC_030728
TCONS_00061909 lncRNA upstream 918164 1317890 ~ 1419531 (-) False XLOC_030734
TCONS_00059838 mRNA downstream 74593 318217 ~ 323712 (-) True XLOC_030715
TCONS_00059835 mRNA downstream 196705 31748 ~ 201600 (-) True XLOC_030710
TCONS_00059842 mRNA upstream 424983 824709 ~ 825920 (-) False XLOC_030722
TCONS_00059846 mRNA upstream 598570 998296 ~ 1047504 (-) False XLOC_030727
TCONS_00059847 mRNA upstream 627858 1027584 ~ 1047222 (-) True XLOC_030727
TCONS_00059848 mRNA upstream 673204 1072930 ~ 1076431 (-) True XLOC_030729
TCONS_00059849 mRNA upstream 780977 1180703 ~ 1203455 (-) True XLOC_030730
TCONS_00059839 other upstream 62395 462121 ~ 462235 (-) True XLOC_030719
TCONS_00059840 other upstream 88133 487859 ~ 487975 (-) True XLOC_030720
TCONS_00059841 other upstream 422226 821952 ~ 822286 (-) True XLOC_030721
TCONS_00059843 other upstream 433873 833599 ~ 833933 (-) True XLOC_030723
TCONS_00059844 other upstream 436411 836137 ~ 836290 (-) True XLOC_030724

Expression Profile

//