RNA id: TCONS_00061505


Basic Information

Item Value
RNA id TCONS_00061505
length 3681
lncRNA type intronic
GC content 0.31
exon number 2
gene id XLOC_030725
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 921488 ~ 926077 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

tttaatttaatttaatttaatttaatttaatttaatttagatttattttattttattttattttattttattttattttattttattttattttattttattttattaacttggTCCAAACATTGAGAATGCTAAATGAAAACCAGAGAGTCAaaattactaaatatatatatggaAATAAAATTGATGCATCTAAAAATTCAAAAAACGGCATAACACAATAGCCACAGCACACAAGCTGTGGTTTAATAAATGTATGGCATTCCTTTACTCAGAgcgaagcacttcattcacaaaCCTGAAAACTggttaaactaaaaaaatgtaatttaatttaatttattggtGGTAATGTGTCTTATGAAAACTACAGTAGAGATAGAATTAAAAAacagcttatttaaaaaatatattaatgcataattttctttacattttactcAGAAACTGATATTGCATTTGACaagtgattaaataaaaatagaaaagaacACTGAATTAAACCTGACATTCAGAAGTGAAAAGCAAAGTAATCTACCATGCAATCCCAATATTAAGTCAACAAACTTCAgaacatttttaagtttattaaacTTAAATCAAGTCAAGAGCAGTGAatgggttgaaagttgagtcaactcaaaatgtcctgaagtttgttaccttatttttaaattgagtcaactttttttttttactgtgcagttttcttaaaataaaatgaggTGAATTTATGATTTAAAACAGAATCCTCCAGACGGGTCAGAAAAACACATGCAATGTAAAGAGAACTGTTTTCTAAGCCTGTGTTTTATTTCTGAACTCAGTGTTTTAAATGTCTTCATTTTGCTCTAGCAAATGCATCTTGATTTACTGTAATGCTAATATTCAGATATTTGTTCTGGAAAACGAAAGAAACACAGATTTTtgtatcatatttattttataatcgttctgttgattattattttatcattaaatatGACTGTTTTTGATTTCTCCATCAGTTCATGAAGGTATAATAATGTTAAAGCGGACAAACATGAAGACAAAAAATCAGCTTTATTACCTTCAGATGAACacatttgagtttttttaacTCAAGAGCAAAAGAGACATTTTATGTGCCTAAATATATTTctgttcactttatttatttatttcctctgtAAACGCTGCGAGGCAGAAGAAGACGGATGAATGCAAGACAGAAGGAAAGACCAAACGCGTCCCGaaatttgatatttttctgctttccacacacacagacctgcAGTGCTGTTTTTTACTGTACAGTTGCAGCGAGCGAGCGATTGATGGACTGTGGCGTCATGGACTCGGACGGGTTTCTACCgatatatttaatatatgatTTAGAGTGTTCCTTTCAGCGTAATTTATGAAGATTAATTCTAGAGCTTTTATTTAGGCCGTTAGGAAAATAAAGGGATTCTGGGACGGAGTTTCACTGTGGTTTTTGAACATGAAGACTGGACGAtacttttatcttttattttggctTCAGCATCATGAACACTTTGGGTTGTCTAGCGATGTTTGTGTGTCATTATAAATGTGATCGACGACATTCCTGATCAATTTCTGGGGAATCATGAAGTCTGTGTAAATCTGCGGTGTCGGTAAACTCTGCTTCCCTCACAGTCTGTTCATTTCTCACAGAGTCCTGCTGTCCAGGAAAAGTTCTGCTGGAGATTTGATGTTCGAAACTAAAAAATGAAGCTCACGATTAAGTTCATCGCACACGAGTTCCACATTTTTGCATGCATTTATTCGTATTTGTTAAACTAGAAAAATGTGTCACCCTTAAGTTCATTGCACACTGTCCGAAATTTtcgcatacatttttttatatttttgttatctAACAGGAATTTTCACCTTTAAGTTAATCGCACACTTGGGCTAAAATGTTTGCATGCATTTTTTCATattcactattttttttattgtcaattcCAAGTTGATTGCACACTAATATGAAATTTATGTATGCATTTCTcatattcaatattttttaaaaagtaatcactctTAAGATCTTTGCACACTGATTTTGAAATTTTTATGTCTCTTTGTGgttgttaaacaaaaaaactgtcaCTCTTAATATCTTCACTTACTAATGCGAAATTTTCATATgcatttttcagatttgttttactAAACAATTCGTCACTTTTAAgtttattgcacactgaattGTCCAAAATTGTTATATGCGCTTATTAGTattctttcattttaaaatattgtcatCGTTAAGTTCATTGCACACTGGTTAATCTTGTTATTTCAAGATTTAATCTCTTGAAATCTTCGCGCACTGATTCTAAATTTTCACATGCACTTTTTCATATTCGTAACCTTAATATTttccccctttatttatttttcacttcaACGTTTATTGTGCACAGAGCTGAAGTTATTGAATGCACTTTTTCGTATTTGTTATACTAATATTCACTTTTAAGTTCATCGCACACTGAGTTTTAAATTCATATGCATTATTTTTGTATTGGTTATCCTAATGAATTCGCCACTCTTAAGATTTCTGCATACTGCGTCTGAAATATTCATATGCATTTTTCTATATtcgttattttaaaaaagtaatcacaCTCGCAAATCGGCACACACTGCATTCCAAACTTTCATATGTGTTCTTTTGTATTCATTATCCTAAAAAGATCGTTACCTTTACATTTTTTACGCACTGAGCCGAATTTTTCATATGCATGTTTTCGTATTTGCTACACTAAAAATTTGTCACTTAAGTTCATCGCACAGTTTGAAATGTTCATATGTATATGTTCGTATTTGCTATTCTAAAAAAAGGGTCAACTTTCAGTTCTTTCCATAAAGTCAgaaattttgaatgtttttttttccgcaTTTGTTAAATTTATAACATTTCGTCACCATTGTTTATTGTAGTCCAaaatttttgtatgtattttaattatCCTAAAATTATTTGATCTTAAGTAAGAATTTTTATGTGTTtgatcaaattattttatttgttatacctAAAAAATCATCACTCTTAAGTTCATGGCGCACTGTCTGACATTTTCGcaggttaaaaaataaacacaagctACTATTGTGTTTGTATTCCACAATTTGTTTGTCATGAAGTGCTGCGTGAAGAAGTGGATTCATTTGTCACTGCGTTTGTCGAAACACCTCCTATAGATGCGAAAATTAGAGAAATGATGATGCACAAAAGTTTCTGCAGCAGTGTGTCAATGTATTtggcagtatttatttatttttaacatgcaaATTTTGATGGAAATTTGGAACTCTGTGTCGACTGAAATCTCATAACAGCAGCAGTGCATATAATAATTCATCATTCACAATCTCACATGTCTTTATCCAGtctaaattattcaattaaaccttttataattaaaaaaatattattattattattattacctgtATCATATCATTTTAAAAGTGCAAGTAGATGCATTGACGTCACCATTTTATGAAACAAATTGGATGTAACTGGTATAAGTCCAGTTGCCGAACGTGTCTTCTTCAGTGAACTCTTCCTGTGACGGGGCTGAGCAACTCCTTCATTAATTAGCTTCATTAATTAGAGGAGCGTTAGACGAGGACTCatcatccctgtgtgtgtgtgtg

Function

GO:

id name namespace
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019219 regulation of nucleobase-containing compound metabolic process biological_process
GO:0048468 cell development biological_process
GO:0018130 heterocycle biosynthetic process biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007517 muscle organ development biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0030154 cell differentiation biological_process
GO:0048513 animal organ development biological_process
GO:0055001 muscle cell development biological_process
GO:0030182 neuron differentiation biological_process
GO:0007275 multicellular organism development biological_process
GO:0007010 cytoskeleton organization biological_process
GO:0048856 anatomical structure development biological_process
GO:0051252 regulation of RNA metabolic process biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:1901362 organic cyclic compound biosynthetic process biological_process
GO:0048869 cellular developmental process biological_process
GO:0032989 cellular component morphogenesis biological_process
GO:0030029 actin filament-based process biological_process
GO:0048666 neuron development biological_process
GO:0007399 nervous system development biological_process
GO:0030036 actin cytoskeleton organization biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0019438 aromatic compound biosynthetic process biological_process
GO:0007417 central nervous system development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:0034654 nucleobase-containing compound biosynthetic process biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0099080 supramolecular complex cellular_component
GO:0099081 supramolecular polymer cellular_component
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0015629 actin cytoskeleton cellular_component
GO:0099512 supramolecular fiber cellular_component
GO:0031674 I band cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000977 RNA polymerase II transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0003779 actin binding molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061504 lncRNA downstream 94681 824709 ~ 826807 (-) True XLOC_030722
TCONS_00061907 lncRNA downstream 470875 446396 ~ 450613 (-) True XLOC_030718
TCONS_00061503 lncRNA downstream 521762 398305 ~ 399726 (-) True XLOC_030717
TCONS_00061906 lncRNA downstream 584398 326684 ~ 337090 (-) True XLOC_030716
TCONS_00061501 lncRNA downstream 614348 299145 ~ 307140 (-) True XLOC_030713
TCONS_00061908 lncRNA upstream 80373 1006450 ~ 1084749 (-) True XLOC_030728
TCONS_00061909 lncRNA upstream 391813 1317890 ~ 1419531 (-) False XLOC_030734
TCONS_00061910 lncRNA upstream 492071 1418148 ~ 1419531 (-) True XLOC_030734
TCONS_00059857 lncRNA upstream 528309 1454386 ~ 1456830 (-) False XLOC_030736
TCONS_00059858 lncRNA upstream 534286 1460363 ~ 1464435 (-) False XLOC_030736
TCONS_00059842 mRNA downstream 95568 824709 ~ 825920 (-) False XLOC_030722
TCONS_00059837 mRNA downstream 503953 315183 ~ 417535 (-) False XLOC_030715
TCONS_00059836 mRNA downstream 503993 315183 ~ 417495 (-) False XLOC_030715
TCONS_00059838 mRNA downstream 597776 318217 ~ 323712 (-) True XLOC_030715
TCONS_00059835 mRNA downstream 719888 31748 ~ 201600 (-) True XLOC_030710
TCONS_00059846 mRNA upstream 72219 998296 ~ 1047504 (-) False XLOC_030727
TCONS_00059847 mRNA upstream 101507 1027584 ~ 1047222 (-) True XLOC_030727
TCONS_00059848 mRNA upstream 146853 1072930 ~ 1076431 (-) True XLOC_030729
TCONS_00059849 mRNA upstream 254626 1180703 ~ 1203455 (-) True XLOC_030730
TCONS_00059851 mRNA upstream 277690 1203767 ~ 1218801 (-) True XLOC_030732
TCONS_00059844 other downstream 85198 836137 ~ 836290 (-) True XLOC_030724
TCONS_00059843 other downstream 87555 833599 ~ 833933 (-) True XLOC_030723
TCONS_00059841 other downstream 99202 821952 ~ 822286 (-) True XLOC_030721
TCONS_00059840 other downstream 433513 487859 ~ 487975 (-) True XLOC_030720
TCONS_00059839 other downstream 459253 462121 ~ 462235 (-) True XLOC_030719
TCONS_00059845 other upstream 71735 997812 ~ 997928 (-) True XLOC_030726
TCONS_00059850 other upstream 255332 1181409 ~ 1181524 (-) True XLOC_030731
TCONS_00059855 other upstream 450696 1376773 ~ 1376868 (-) True XLOC_030735
TCONS_00059864 other upstream 911072 1837149 ~ 1837260 (-) True XLOC_030739
TCONS_00059866 other upstream 1026575 1952652 ~ 1952778 (-) True XLOC_030742

Expression Profile

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