Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00059846 |
| length | 1253 |
| RNA type | mRNA |
| GC content | 0.50 |
| exon number | 5 |
| gene id | XLOC_030727 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 998296 ~ 1047504 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0016581 | NuRD complex | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0008327 | methyl-CpG binding | molecular_function |
| id | description |
|---|---|
| ko03036 | Chromosome and associated proteins |
| id | description |
|---|---|
| ZDB-GENE-030131-9049 | Predicted to enable DNA binding activity. Predicted to be located in nucleus. Human ortholog(s) of this gene implicated in schizophrenia. Orthologous to human MBD2 (methyl-CpG binding domain protein 2). |
| ensembl_id | ENSDART00000159346 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061505 | lncRNA | downstream | 72219 | 921488 ~ 926077 (-) | True | XLOC_030725 |
| TCONS_00061504 | lncRNA | downstream | 171489 | 824709 ~ 826807 (-) | True | XLOC_030722 |
| TCONS_00061907 | lncRNA | downstream | 547683 | 446396 ~ 450613 (-) | True | XLOC_030718 |
| TCONS_00061503 | lncRNA | downstream | 598570 | 398305 ~ 399726 (-) | True | XLOC_030717 |
| TCONS_00061906 | lncRNA | downstream | 661206 | 326684 ~ 337090 (-) | True | XLOC_030716 |
| TCONS_00061909 | lncRNA | upstream | 270386 | 1317890 ~ 1419531 (-) | False | XLOC_030734 |
| TCONS_00061910 | lncRNA | upstream | 370644 | 1418148 ~ 1419531 (-) | True | XLOC_030734 |
| TCONS_00059857 | lncRNA | upstream | 406882 | 1454386 ~ 1456830 (-) | False | XLOC_030736 |
| TCONS_00059858 | lncRNA | upstream | 412859 | 1460363 ~ 1464435 (-) | False | XLOC_030736 |
| TCONS_00061911 | lncRNA | upstream | 832007 | 1879511 ~ 1906537 (-) | True | XLOC_030740 |
| TCONS_00059842 | mRNA | downstream | 172376 | 824709 ~ 825920 (-) | False | XLOC_030722 |
| TCONS_00059837 | mRNA | downstream | 580761 | 315183 ~ 417535 (-) | False | XLOC_030715 |
| TCONS_00059836 | mRNA | downstream | 580801 | 315183 ~ 417495 (-) | False | XLOC_030715 |
| TCONS_00059838 | mRNA | downstream | 674584 | 318217 ~ 323712 (-) | True | XLOC_030715 |
| TCONS_00059835 | mRNA | downstream | 796696 | 31748 ~ 201600 (-) | True | XLOC_030710 |
| TCONS_00059848 | mRNA | upstream | 25426 | 1072930 ~ 1076431 (-) | True | XLOC_030729 |
| TCONS_00059849 | mRNA | upstream | 133199 | 1180703 ~ 1203455 (-) | True | XLOC_030730 |
| TCONS_00059851 | mRNA | upstream | 156263 | 1203767 ~ 1218801 (-) | True | XLOC_030732 |
| TCONS_00059852 | mRNA | upstream | 192153 | 1239657 ~ 1274794 (-) | False | XLOC_030733 |
| TCONS_00059853 | mRNA | upstream | 200214 | 1247718 ~ 1274811 (-) | False | XLOC_030733 |
| TCONS_00059845 | other | downstream | 368 | 997812 ~ 997928 (-) | True | XLOC_030726 |
| TCONS_00059844 | other | downstream | 162006 | 836137 ~ 836290 (-) | True | XLOC_030724 |
| TCONS_00059843 | other | downstream | 164363 | 833599 ~ 833933 (-) | True | XLOC_030723 |
| TCONS_00059841 | other | downstream | 176010 | 821952 ~ 822286 (-) | True | XLOC_030721 |
| TCONS_00059840 | other | downstream | 510321 | 487859 ~ 487975 (-) | True | XLOC_030720 |
| TCONS_00059850 | other | upstream | 133905 | 1181409 ~ 1181524 (-) | True | XLOC_030731 |
| TCONS_00059855 | other | upstream | 329269 | 1376773 ~ 1376868 (-) | True | XLOC_030735 |
| TCONS_00059864 | other | upstream | 789645 | 1837149 ~ 1837260 (-) | True | XLOC_030739 |
| TCONS_00059866 | other | upstream | 905148 | 1952652 ~ 1952778 (-) | True | XLOC_030742 |
| TCONS_00059868 | other | upstream | 912569 | 1960073 ~ 1960200 (-) | True | XLOC_030743 |
