RNA id: TCONS_00059854


Basic Information

Item Value
RNA id TCONS_00059854
length 564
RNA type mRNA
GC content 0.54
exon number 6
gene id XLOC_030733
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 1239657 ~ 1274811 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGCCAAAAAACACAAAACTCAAGAGTCAGAGGAGCCTTTGGAGAAAGATTCAGCTGAAAACACTGAATGTAAGAGCCCTGCAGATGCTGGAGATTCTCTACCAGAGGAAAGTGTTGTAAATGAACCACCGGCCACTGAAGCAGAAGAACAGTGTCAAGCGGACAAGcAGACTGATGCTGCAGATGTGGATCAGCCGATCAGTGGAGCTCCAGCAGATGCCGGCAGCTCTGATTCAGTGTCTGCAGTAAAGCAGCCGGAAGCGGCTCCAGTCCAGCACCAGCTCACAGACACGGCGGCAGCAGCAGAATCCTCCAGCAGCTTCTTCTGCTATATCTGCAACATCACCTGCCATAACCAGCAGAATTTCCAGAGCCATATGAACGGACTGACGCACCAGCAGAAGATGATGGAGATCCAGCACATGAGTAACGCCTGTCTGGTCACATTACTGCCGCGCGTCCAGGAGTCACTGCAGGGAGCAGCTCGCAAAGACGGTGAGAAGAGGCCTGGTCTGCAGAGATGGTGCTCCACCTGCCAGACTCACTTCACCAGCAACGTCATGG

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-100922-222 Predicted to enable nucleic acid binding activity and zinc ion binding activity. Predicted to be active in nucleus. Orthologous to human CIZ1 (CDKN1A interacting zinc finger protein 1).

Ensembl:

ensembl_id ENSDART00000135416

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061908 lncRNA downstream 166231 1006450 ~ 1084749 (-) True XLOC_030728
TCONS_00061505 lncRNA downstream 324903 921488 ~ 926077 (-) True XLOC_030725
TCONS_00061504 lncRNA downstream 424173 824709 ~ 826807 (-) True XLOC_030722
TCONS_00061907 lncRNA downstream 800367 446396 ~ 450613 (-) True XLOC_030718
TCONS_00061503 lncRNA downstream 851254 398305 ~ 399726 (-) True XLOC_030717
TCONS_00061909 lncRNA upstream 53540 1317890 ~ 1419531 (-) False XLOC_030734
TCONS_00061910 lncRNA upstream 153798 1418148 ~ 1419531 (-) True XLOC_030734
TCONS_00059857 lncRNA upstream 190036 1454386 ~ 1456830 (-) False XLOC_030736
TCONS_00059858 lncRNA upstream 196013 1460363 ~ 1464435 (-) False XLOC_030736
TCONS_00061911 lncRNA upstream 615161 1879511 ~ 1906537 (-) True XLOC_030740
TCONS_00059851 mRNA downstream 32179 1203767 ~ 1218801 (-) True XLOC_030732
TCONS_00059849 mRNA downstream 47525 1180703 ~ 1203455 (-) True XLOC_030730
TCONS_00059848 mRNA downstream 174549 1072930 ~ 1076431 (-) True XLOC_030729
TCONS_00059846 mRNA downstream 203476 998296 ~ 1047504 (-) False XLOC_030727
TCONS_00059856 mRNA upstream 167724 1432074 ~ 1487262 (-) False XLOC_030736
TCONS_00059859 mRNA upstream 199941 1464291 ~ 1487256 (-) False XLOC_030736
TCONS_00059860 mRNA upstream 200263 1464613 ~ 1487262 (-) False XLOC_030736
TCONS_00059861 mRNA upstream 204111 1468461 ~ 1487259 (-) True XLOC_030736
TCONS_00059862 mRNA upstream 404128 1668478 ~ 1827575 (-) True XLOC_030737
TCONS_00059850 other downstream 69456 1181409 ~ 1181524 (-) True XLOC_030731
TCONS_00059845 other downstream 253052 997812 ~ 997928 (-) True XLOC_030726
TCONS_00059844 other downstream 414690 836137 ~ 836290 (-) True XLOC_030724
TCONS_00059843 other downstream 417047 833599 ~ 833933 (-) True XLOC_030723
TCONS_00059841 other downstream 428694 821952 ~ 822286 (-) True XLOC_030721
TCONS_00059855 other upstream 112423 1376773 ~ 1376868 (-) True XLOC_030735
TCONS_00059864 other upstream 572799 1837149 ~ 1837260 (-) True XLOC_030739
TCONS_00059866 other upstream 688302 1952652 ~ 1952778 (-) True XLOC_030742
TCONS_00059868 other upstream 695723 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059869 other upstream 697932 1962282 ~ 1962409 (-) True XLOC_030744

Expression Profile

//