RNA id: TCONS_00059857


Basic Information

Item Value
RNA id TCONS_00059857
length 612
lncRNA type retained_intron
GC content 0.46
exon number 3
gene id XLOC_030736
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 1432074 ~ 1487262 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTTTAATAAAGCGGTTTTCATGCAAACATGTTTAGGTAAAAAGAGTCTCGTAAAGCTTTTCTGAGTGCTCCACTGCTTTGGACTGCTCTTGACTTTGGCACAGCATCTTAAAAAATGCAGTGCTCGTGTGTGTGAGACACTGCATAAGACACAAGACGTGATCTTAACAGTCACGCACATCCATCCAGTGCATAAGATAGAAAAGCAATAAGTAGTGCATTTGAGTGGAAAACCTGATTCTGTGTAATGtgaattattaatataatcacaTATAATAAAGCTGCCGtgtcatatatgtgtgtgtgtgtcagtaatgTGAGTGAGGAGTCCAGGCAGCAGAGCTCTGAATTATCCGAGCAGCTGAAGCTGAGAGTGAATGAAAACAGCGCTCTGAAACTGGAGCTGGAGGATCTGCGCAAACGCCTGGAGATGGCAGACGTCATGCTGCAGCAGTTCTCCAGTCAGTCTGGTCCTCCATCTGAACACCAGCAGCTTCAGCTCCTCCTGGAGGAAAAACACCAGTTAGAGAATCACGCAACTCAGCTGATGGAGTCGGTGGCTCAGCTGCAGGCGGAGAGAGATCAGTACGCTGTACAGATGCAGGAGGATGGA

Function

GO:

id name namespace
GO:0007519 skeletal muscle tissue development biological_process
GO:0007030 Golgi organization biological_process
GO:0007420 brain development biological_process
GO:0001966 thigmotaxis biological_process
GO:0032580 Golgi cisterna membrane cellular_component
GO:0005794 Golgi apparatus cellular_component
GO:0005801 cis-Golgi network cellular_component
GO:0000137 Golgi cis cisterna cellular_component

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-081030-1 Acts upstream of or within brain development; skeletal muscle tissue development; and thigmotaxis. Predicted to be located in Golgi apparatus. Predicted to be active in Golgi cis cisterna; Golgi cisterna membrane; and cis-Golgi network. Is expressed in otic vesicle. Orthologous to several human genes including GOLGA2 (golgin A2).

Ensembl:

ensembl_id ENSDART00000144156

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061909 lncRNA downstream 34855 1317890 ~ 1419531 (-) False XLOC_030734
TCONS_00061910 lncRNA downstream 34855 1418148 ~ 1419531 (-) True XLOC_030734
TCONS_00061908 lncRNA downstream 369637 1006450 ~ 1084749 (-) True XLOC_030728
TCONS_00061505 lncRNA downstream 528309 921488 ~ 926077 (-) True XLOC_030725
TCONS_00061504 lncRNA downstream 627579 824709 ~ 826807 (-) True XLOC_030722
TCONS_00059858 lncRNA upstream 3533 1460363 ~ 1464435 (-) False XLOC_030736
TCONS_00061911 lncRNA upstream 422681 1879511 ~ 1906537 (-) True XLOC_030740
TCONS_00061912 lncRNA upstream 532630 1989460 ~ 1991666 (-) True XLOC_030745
TCONS_00061913 lncRNA upstream 540934 1997764 ~ 1998553 (-) False XLOC_030746
TCONS_00059871 lncRNA upstream 540934 1997764 ~ 1999493 (-) False XLOC_030746
TCONS_00059853 mRNA downstream 179575 1247718 ~ 1274811 (-) False XLOC_030733
TCONS_00059852 mRNA downstream 179592 1239657 ~ 1274794 (-) False XLOC_030733
TCONS_00059854 mRNA downstream 190036 1250980 ~ 1264350 (-) True XLOC_030733
TCONS_00059851 mRNA downstream 235585 1203767 ~ 1218801 (-) True XLOC_030732
TCONS_00059849 mRNA downstream 250931 1180703 ~ 1203455 (-) True XLOC_030730
TCONS_00059859 mRNA upstream 7461 1464291 ~ 1487256 (-) False XLOC_030736
TCONS_00059860 mRNA upstream 7783 1464613 ~ 1487262 (-) False XLOC_030736
TCONS_00059861 mRNA upstream 11631 1468461 ~ 1487259 (-) True XLOC_030736
TCONS_00059862 mRNA upstream 211648 1668478 ~ 1827575 (-) True XLOC_030737
TCONS_00059863 mRNA upstream 376911 1833741 ~ 1869982 (-) True XLOC_030738
TCONS_00059855 other downstream 77518 1376773 ~ 1376868 (-) True XLOC_030735
TCONS_00059850 other downstream 272862 1181409 ~ 1181524 (-) True XLOC_030731
TCONS_00059845 other downstream 456458 997812 ~ 997928 (-) True XLOC_030726
TCONS_00059844 other downstream 618096 836137 ~ 836290 (-) True XLOC_030724
TCONS_00059843 other downstream 620453 833599 ~ 833933 (-) True XLOC_030723
TCONS_00059864 other upstream 380319 1837149 ~ 1837260 (-) True XLOC_030739
TCONS_00059866 other upstream 495822 1952652 ~ 1952778 (-) True XLOC_030742
TCONS_00059868 other upstream 503243 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059869 other upstream 505452 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059873 other upstream 755842 2212672 ~ 2212788 (-) True XLOC_030748

Expression Profile

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