RNA id: TCONS_00059871


Basic Information

Item Value
RNA id TCONS_00059871
length 705
lncRNA type read_through
GC content 0.45
exon number 2
gene id XLOC_030746
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 1997764 ~ 1999493 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATCAACGAAGACACACGTGATGCTCGTGTTTGAGAAAACCGTGTGACTTCAGCGATGTTGTTTACACGCATTAACAGACTTGCAGAGAGAAGCTCCTCAAGAAAATGGCTGCAGAAATGGAAAGATTCACTTCATTCGAAGAGGCGCATTACGACCAATATGATTATTATAACCTGGAGGATTATTCCTCTCACGCTGGAGGGAAAGGCAGGAGTAAGAAGGAGATCTGCCTGAACACGAATCGCCATTCTCCAGCGGGACACGAGCGCAAAATCGCTGGAAAACTGCAGAACAGCGAGCTGAAACGCCGGAGAACCAAGAGCTGCTCCTCCTGAGGACATTCCCGGAGAATCCGACTGCTCGTACTGGAGATGGACGAAAGAAACCGGATTGTGGTCCAAGAAATGTCTGTTTTGCCTTTTTCCACTCGATGTTGATGTCGAGGACTCGCAATGTCGTTCATGCGCATGCGCAACTGTGTCACATTCTGCAGCCGCCGTCACGCGACCTGCTGCAGcagtgtgtatgagagagtgagagtgtgtctgtgtgtgtgtgtctgtgtgtcatgTCTTATAAACGTTTGTTGACTTTTATAACTATTAAAACGTGTTCAGCTGAAGGAAACTATTCTGAGAGTAGAGAATATGTAAACTTGTGTAATGGaagataaattattataataaagacaTTTTGCATTCAT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061912 lncRNA downstream 6098 1989460 ~ 1991666 (-) True XLOC_030745
TCONS_00061911 lncRNA downstream 91227 1879511 ~ 1906537 (-) True XLOC_030740
TCONS_00059858 lncRNA downstream 533329 1460363 ~ 1464435 (-) False XLOC_030736
TCONS_00059857 lncRNA downstream 540934 1454386 ~ 1456830 (-) False XLOC_030736
TCONS_00061910 lncRNA downstream 578233 1418148 ~ 1419531 (-) True XLOC_030734
TCONS_00059881 lncRNA upstream 772796 2772289 ~ 2775472 (-) True XLOC_030755
TCONS_00061914 lncRNA upstream 1087738 3087231 ~ 3089463 (-) True XLOC_030756
TCONS_00061915 lncRNA upstream 1167706 3167199 ~ 3169025 (-) True XLOC_030758
TCONS_00059886 lncRNA upstream 1258630 3258123 ~ 3266117 (-) False XLOC_030760
TCONS_00059885 lncRNA upstream 1258630 3258123 ~ 3266117 (-) False XLOC_030760
TCONS_00059865 mRNA downstream 34266 1950660 ~ 1963498 (-) False XLOC_030741
TCONS_00059867 mRNA downstream 35264 1955655 ~ 1962500 (-) True XLOC_030741
TCONS_00059863 mRNA downstream 127782 1833741 ~ 1869982 (-) True XLOC_030738
TCONS_00059862 mRNA downstream 170189 1668478 ~ 1827575 (-) True XLOC_030737
TCONS_00059860 mRNA downstream 510502 1464613 ~ 1487262 (-) False XLOC_030736
TCONS_00059872 mRNA upstream 66769 2066262 ~ 2112030 (-) True XLOC_030747
TCONS_00059874 mRNA upstream 242230 2241723 ~ 2282256 (-) True XLOC_030749
TCONS_00059875 mRNA upstream 410061 2409554 ~ 2636078 (-) True XLOC_030750
TCONS_00059876 mRNA upstream 651919 2651412 ~ 2672492 (-) False XLOC_030751
TCONS_00059877 mRNA upstream 651919 2651412 ~ 2676783 (-) True XLOC_030751
TCONS_00059869 other downstream 35355 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 37564 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059866 other downstream 44986 1952652 ~ 1952778 (-) True XLOC_030742
TCONS_00059864 other downstream 160504 1837149 ~ 1837260 (-) True XLOC_030739
TCONS_00059855 other downstream 620896 1376773 ~ 1376868 (-) True XLOC_030735
TCONS_00059873 other upstream 213179 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059909 other upstream 2224022 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059924 other upstream 2943105 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059943 other upstream 4531574 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 4929541 6929034 ~ 6929148 (-) True XLOC_030810

Expression Profile

//