RNA id: TCONS_00061915


Basic Information

Item Value
RNA id TCONS_00061915
length 1261
lncRNA type inter_gene
GC content 0.33
exon number 2
gene id XLOC_030758
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 3167199 ~ 3169025 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATGCAGCTCAAACTTTATCTTGTAATGCTGTTCATCACTAAGGTATGAATCTTGAAATGTGACGACTGAATCATCTTGAAATGTGACTactgaatcattttaaaatgtgacaACTGAATCATCTTGAAATGTGACTACTGAATCATCTTGAAATGTGACTACTGAATCATCTTGAAATGTGACTACTGAATCATCTTAAAACATGACTACTGAATCATCTTAAAATGTGACTACTGAATCATCTTGAAACGTTTCTACTAAATCATCTTAAAATGTGACTACTGAATCATCCTAAAATGTGACAACTGAATCATCTTGAAATGTGACTACTGAATCATCTTGAAATGTGACTACTGAATCATCTTGAAATGTGACTACTGAATCATCTTGAAATGTGACTACTGAATCATCTTGAAACGTTTCTACTGAATCATCTTAAAACGTGACTACTGAATCATCTTGAAATGTGACTACTGAATCATCTTGAAATATGACTACTGAATCATCTTGAAATATGACTACTTAATCATCTTGAAATATGACTACTGAATCATTTTGAAAAAGAGCACTGAATCGTCTTGAAACATGACTACTGAATCATCTAGAAACGTTTCTACTGAATCATCTTGAAATGTGACTACTGAATCATCTTGAAATGCGACTACTGAATCATCTTGAAATGCGACTACTGTATCATCTTGAAACGCGACTACTGAATCATCTTAAAACATGACTACTGAATCATCATGAAACATGACTACTGAATCATCTTAAAATTTGACTACTGAATCATCTAAAAACATGACTACTGAATCGTCTTGAAACATGACCACTGAATCGTCTTGAAACATGACCACTGAATCATCTTAAAATGTGACTAAAGAATCGTCTTTAAACATGACTACTGAATCATCTTAAAATGTAACTAACGAGTCATCTTGAAACATGACTAATGACTCATCTTGAAATGCGAATATTGAATCATCTTAAAATTTGACTACAAAATTGTCTTGAAATTTGACTACCGAATCATCTTGATATATAACCACTGAATCATCTTGAAATGCAACTACTGAATTATTTTGAAATGTGACCACTGAATCATATTTTATCGAATCATTTTGCAATGATTTGATGCAATTCCTTTGAAAAAGTTCAAGACTGTACGCTCTGTAAACCCCTCCCCCTTCCATAAGCCAGCTTTCCTCTGATTGGAcagtctgttttgattggtcttttTCAAATGTTGCTGTAGAATG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061914 lncRNA downstream 77736 3087231 ~ 3089463 (-) True XLOC_030756
TCONS_00059881 lncRNA downstream 391727 2772289 ~ 2775472 (-) True XLOC_030755
TCONS_00059871 lncRNA downstream 1167706 1997764 ~ 1999493 (-) False XLOC_030746
TCONS_00061913 lncRNA downstream 1168646 1997764 ~ 1998553 (-) False XLOC_030746
TCONS_00061912 lncRNA downstream 1175533 1989460 ~ 1991666 (-) True XLOC_030745
TCONS_00059886 lncRNA upstream 89098 3258123 ~ 3266117 (-) False XLOC_030760
TCONS_00059885 lncRNA upstream 89098 3258123 ~ 3266117 (-) False XLOC_030760
TCONS_00061506 lncRNA upstream 92148 3261173 ~ 3263750 (-) True XLOC_030760
TCONS_00059887 lncRNA upstream 141983 3311008 ~ 3363145 (-) False XLOC_030761
TCONS_00059888 lncRNA upstream 141983 3311008 ~ 3430355 (-) False XLOC_030761
TCONS_00059882 mRNA downstream 48853 3094981 ~ 3118346 (-) False XLOC_030757
TCONS_00059883 mRNA downstream 52781 3095077 ~ 3114418 (-) True XLOC_030757
TCONS_00059880 mRNA downstream 414626 2742232 ~ 2752573 (-) True XLOC_030754
TCONS_00059879 mRNA downstream 445513 2713779 ~ 2721686 (-) True XLOC_030753
TCONS_00059878 mRNA downstream 477446 2680455 ~ 2689753 (-) True XLOC_030752
TCONS_00059884 mRNA upstream 15730 3184755 ~ 3209345 (-) True XLOC_030759
TCONS_00059890 mRNA upstream 398991 3568016 ~ 3574199 (-) False XLOC_030765
TCONS_00059892 mRNA upstream 400061 3569086 ~ 3584815 (-) True XLOC_030765
TCONS_00059893 mRNA upstream 442473 3611498 ~ 3627110 (-) True XLOC_030766
TCONS_00059895 mRNA upstream 514028 3683053 ~ 3684402 (-) True XLOC_030768
TCONS_00059873 other downstream 954411 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 1204790 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 1206999 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059866 other downstream 1214421 1952652 ~ 1952778 (-) True XLOC_030742
TCONS_00059864 other downstream 1329939 1837149 ~ 1837260 (-) True XLOC_030739
TCONS_00059909 other upstream 1054490 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059924 other upstream 1773573 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059943 other upstream 3362042 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 3760009 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 3979266 7148291 ~ 7148407 (-) True XLOC_030811

Expression Profile

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