RNA id: TCONS_00061916


Basic Information

Item Value
RNA id TCONS_00061916
length 1503
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id XLOC_030762
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 3352108 ~ 3354567 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

aaaatattatcagacaaactgtgaaaatttccttgctcacttgagaaatatttgtaaaaggaATCAATGTTTTACAGGAGAGCAAATCATTTTATATGAAGAGACCTGAGATGGGATGCGATTTTTAGTGCTGCTGCTGATGTATGCATGCTTCAACCCCcaacaccaaaacacacacacgctgtaATCCGTCACCGTCAGGTATCTGAATCCGCGACAAATCACGTGAGGGAGGCAAACGGCGCTTAAGGGTCTTTCTTCATGACTTATAAATGAGTTGAGGGGGGTCGAGGCTCATATTATCGGCCTCAGTGCTGCTGTAACCTCCGTCTCAATATTGCACAGCTTTCATTTCAGCTTTATCACTCTTTTATGAAGCCTAGCGAGCCCCCTACTCAGACAGCATTTTGAGGAAGACAATGGTTCGGTTCATGCAGTATTgaaaaccatttatttatttattggtttatttcaagtgtttatCACTAGGTTATGAACGTAAAACTtgtcttattttatattaatgactTCGTTCACTTCATTCTGTAATTTAAAAAGGACTAAATTCACAATGCACGACATGGCAAGCTGCATCCAGGataataccccccccccccccccttcccaaAAAATAAGAGCATAATAGAGTGACTTTAAGGACTTTTTCTTCATAGCTCAGTGTGGGAAATACTCCGGCATCAGTCATTGTGTGGATGTAGGTCACGGGAAGCCGGATCGGGAAGCTTTTATTCTTCTGCTCTAAATATCTAGACTGTGACTCTGAATGCTCTGAATGGAAGACGTTCAGGCAAAGAGAACGCAAACGGCAGTCACTCAGAGCGCTGTAAAGTTCAGGAGTTGATGAGGAGAAACTCAGAGCTGCTATCTCTCTGTTTGAAGTCTAGATGAAAGAGCAGCACAGAATATTAATGCACTGCTTTCCCAGTCTCTCCGTGCATGCAGTCACTTCACTCAAGCCCTGAGAGTCTATCAGTATTTGTGCTGAATGTAGAAAAACATCTTGTGGTTTATTTGTAGGGCTTTTCTCAATGTGTGCAGTTTTAAAAGCAGCTTGACAGATAATGCAggtttaaaaatgacaataaaatatcGTTTATTATAAGAGGTGAATGTTAAAGTGTTCATACATGCCTGTATGGCAGAAATTAAGACTGTAATTAAAACGCTGATTACATGTTACCATGATAATTTTTGAATTgtcctgtaataataataataataataataataataataataataatatatgattataacaacaggaacaaaaaaataaaatgggcttataacaaaaaataataataatgataatgataataatcatattaataataataataataataataataataataataatgatgatgttaTAGGATTATAACAACAGGAATAAAAAATAGgcttataacaaaaataataaataaaataaaagtaatgatGATGATATAGGATTATAAcagcaagaataaaaaaaataaa

Function

GO:

id name namespace
GO:0072068 late distal convoluted tubule development biological_process
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1902600 proton transmembrane transport biological_process
GO:0046034 ATP metabolic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0042775 mitochondrial ATP synthesis coupled electron transport biological_process
GO:0006119 oxidative phosphorylation biological_process
GO:0022900 electron transport chain biological_process
GO:0022904 respiratory electron transport chain biological_process
GO:0098655 cation transmembrane transport biological_process
GO:0098660 inorganic ion transmembrane transport biological_process
GO:0098662 inorganic cation transmembrane transport biological_process
GO:0006163 purine nucleotide metabolic process biological_process
GO:0006164 purine nucleotide biosynthetic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009124 nucleoside monophosphate biosynthetic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0055086 nucleobase-containing small molecule metabolic process biological_process
GO:0019637 organophosphate metabolic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009150 purine ribonucleotide metabolic process biological_process
GO:0009152 purine ribonucleotide biosynthetic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009156 ribonucleoside monophosphate biosynthetic process biological_process
GO:0072521 purine-containing compound metabolic process biological_process
GO:0072522 purine-containing compound biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0019693 ribose phosphate metabolic process biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0072025 distal convoluted tubule development biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0045333 cellular respiration biological_process
GO:0098803 respiratory chain complex cellular_component
GO:0005743 mitochondrial inner membrane cellular_component
GO:0005746 mitochondrial respirasome cellular_component
GO:0005747 mitochondrial respiratory chain complex I cellular_component
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0030964 NADH dehydrogenase complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044429 obsolete mitochondrial part cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0044455 obsolete mitochondrial membrane part cellular_component
GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain cellular_component
GO:0019866 organelle inner membrane cellular_component
GO:0070069 cytochrome complex cellular_component
GO:0032991 protein-containing complex cellular_component
GO:1990204 oxidoreductase complex cellular_component
GO:0031090 organelle membrane cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0045271 respiratory chain complex I cellular_component
GO:0045277 respiratory chain complex IV cellular_component
GO:0031966 mitochondrial membrane cellular_component
GO:0031967 organelle envelope cellular_component
GO:0031975 envelope cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic sector F(1) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0070469 respirasome cellular_component
GO:0098796 membrane protein complex cellular_component
GO:0098798 mitochondrial protein-containing complex cellular_component
GO:0005739 mitochondrion cellular_component
GO:0098800 inner mitochondrial membrane protein complex cellular_component
GO:0005740 mitochondrial envelope cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0022890 inorganic cation transmembrane transporter activity molecular_function
GO:0015002 heme-copper terminal oxidase activity molecular_function
GO:0046933 proton-transporting ATP synthase activity, rotational mechanism molecular_function
GO:0015318 inorganic molecular entity transmembrane transporter activity molecular_function
GO:0015075 ion transmembrane transporter activity molecular_function
GO:0015077 monovalent inorganic cation transmembrane transporter activity molecular_function
GO:0015078 proton transmembrane transporter activity molecular_function
GO:0008324 cation transmembrane transporter activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function
GO:0016675 oxidoreductase activity, acting on a heme group of donors molecular_function
GO:0016676 oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00059886 lncRNA downstream 85991 3258123 ~ 3266117 (-) False XLOC_030760
TCONS_00059885 lncRNA downstream 85991 3258123 ~ 3266117 (-) False XLOC_030760
TCONS_00061506 lncRNA downstream 88358 3261173 ~ 3263750 (-) True XLOC_030760
TCONS_00061915 lncRNA downstream 183083 3167199 ~ 3169025 (-) True XLOC_030758
TCONS_00061914 lncRNA downstream 262645 3087231 ~ 3089463 (-) True XLOC_030756
TCONS_00059889 lncRNA upstream 3531 3358098 ~ 3363145 (-) True XLOC_030761
TCONS_00061918 lncRNA upstream 119298 3473865 ~ 3501796 (-) False XLOC_030763
TCONS_00061919 lncRNA upstream 124517 3479084 ~ 3501835 (-) True XLOC_030763
TCONS_00061920 lncRNA upstream 199033 3553600 ~ 3554809 (-) True XLOC_030764
TCONS_00059891 lncRNA upstream 213632 3568199 ~ 3569438 (-) False XLOC_030765
TCONS_00059884 mRNA downstream 142763 3184755 ~ 3209345 (-) True XLOC_030759
TCONS_00059882 mRNA downstream 233762 3094981 ~ 3118346 (-) False XLOC_030757
TCONS_00059883 mRNA downstream 237690 3095077 ~ 3114418 (-) True XLOC_030757
TCONS_00059880 mRNA downstream 599535 2742232 ~ 2752573 (-) True XLOC_030754
TCONS_00059879 mRNA downstream 630422 2713779 ~ 2721686 (-) True XLOC_030753
TCONS_00059890 mRNA upstream 213449 3568016 ~ 3574199 (-) False XLOC_030765
TCONS_00059892 mRNA upstream 214519 3569086 ~ 3584815 (-) True XLOC_030765
TCONS_00059893 mRNA upstream 256931 3611498 ~ 3627110 (-) True XLOC_030766
TCONS_00059895 mRNA upstream 328486 3683053 ~ 3684402 (-) True XLOC_030768
TCONS_00059896 mRNA upstream 464623 3819190 ~ 3839285 (-) True XLOC_030769
TCONS_00059873 other downstream 1139320 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 1389699 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 1391908 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059866 other downstream 1399330 1952652 ~ 1952778 (-) True XLOC_030742
TCONS_00059864 other downstream 1514848 1837149 ~ 1837260 (-) True XLOC_030739
TCONS_00059909 other upstream 868948 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059924 other upstream 1588031 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059943 other upstream 3176500 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 3574467 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 3793724 7148291 ~ 7148407 (-) True XLOC_030811

Expression Profile

//