RNA id: TCONS_00059920


Basic Information

Item Value
RNA id TCONS_00059920
length 2195
lncRNA type lincRNA
GC content 0.37
exon number 3
gene id XLOC_030785
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 4685675 ~ 4697367 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAATTACTTAAGTTACACTGTTGTCATTGTGTTGTCTAGAAATACAATGAATATATTAGTAATAACAATTATGAgtataaacatgtctgaaaagaTTGGGAAGAAATATCATTGTTTTTAAGATCATACATTacatagtaaacaatattttaccagTCATGCCTGCTGTTGTCCACACTAAAGCTCCATCTGATGTGGATCTGCTGTGTTTTTCTCTCTCAGGACTCAATAATGAGCACAGTGTTGATTGTGTCTCCCTCAAGAGGATGAGGGAATGCTAATATTAGTGTAGCGGCTGTGATGGCTAAAGCAGAGTCTCCACGTTTCCTTTCATTAAGTTTCATTGACTGTGAGACCAACAACAATCTAGCATGTTAATGTGAATTCATTCTTCTTCTCCTGTCTCTTTCTGCAGGTCCGTCTGAAGTGTCTCTCTCGATGAGATATAACCGTCGGCCCACCTGTCCTGATGCCACTGTTGGGGTCCACATGCACACCCCTCCACCCTCCCGCCACCGCAAGAGCCACAGCCTCGGGAATGCCATGATGTGGCATTTCGGTGTGGTGGAGAGTAAAAGTGCCACATTTCCCACAGAGAAACCACGCCACCTGCTGGACGACAGCTTCCTGGAGTCCCAGAGTCCAGCCCGAACCCATCCGCACAGCTCCTCTGTGTCCAACGGCATCTCTATAGGCAGCAGTCAGAGTTCATTCTGTGATGATCTTTCTCCAGGAGTCGAGAGGTGAGACTCGGTTTCATGTTATAAATGTGCCTAAATATCATCATCTGTTCATTTTGCAGCTTTAGTATgctctttccacactgtaaaaagtagcgtttctgtattttgtgatttatatatatttttttatttttaattctgctGTTTAAttctgcttttgagttgcatAATGAGAgcttaatctttcttccaacaacgtTTAACCTTGAAAAGGGAACTTTAATGAACGTCTTGAATATTTTGCAGTGGTATATTGTCTGTGTTAgtgttgtatatttgtatttattattaaaaccttgtaataaactgcagcacatgttctgttattttacagacttatttctctagatatttcttatacattatattatttcagactactaaaatgtctataaaagtcactttgttaaactgcagagttgaattttcaacatcaaaagtggacagagcagagatcaacatcccataatgaagttcacaaccgcaaataaacagaaaacacttgtgaatcactaaATACACAAACTGTTCATCAGGTGTAgagtaaaaaaaacatctgttatGCGATAGAAATAGTCTTTTTGGTGCAGTCTGCGCATTGGTAATGTTAATTAAAGCAACATCAATAAGTTGTAGATTTTTTGGAGAATGTGTCATCTTTGTCACTATTGAAGAAAATTTATGAAAATGAGCTCTTTTGTAAGGTATTTTGCTCTTAAATTTGATTATAAAAACAGTATTGTTTGAATTGTATTAGCAAATATTGAAATGaacttacactgtaaaagataTCCGCTAATTAAGTTTCTGTATTTTCTgagtattttacttttatttacagttgaattacattatgggatgttatgggatattgatctctgctctgtcgacttttaatgttgaaaatttacagtaaattctatagttttgtaataatttaaaggttaagaaataatatatagagaaataagtcagaACATGTGCTGGCGGTTTGTTATAAGTACATAAGTAAgacactatgggctctattttgacggtccatgcgcagagcgcaaaacgcagggcgcaaacgctttcagggcgtgtcaggacgtgtttttgctaatttaaggacgggaaatctgccttgcgcctcggcgcatggtctaaaaggattgagtttattttcttaatgagttataggtgtgttttgagaataaaccaattagagtctcatctcccattccctttaagagccagctgcgtcgcgccaagagcgcattcgctatttacaggatgcaaagtaagtctaagtggaaaaaatgagcatttaactagcaaacagttaacagtttttaacagaaaactgttaaacagagcatctactgcgtgagaatgagagataatggatcactttcacatttgctcttggatagggaaacctttacacacagacatcaattagtctataaa

Function

GO:

id name namespace
GO:0022402 cell cycle process biological_process
GO:0098813 nuclear chromosome segregation biological_process
GO:0016070 RNA metabolic process biological_process
GO:0080090 regulation of primary metabolic process biological_process
GO:0051171 regulation of nitrogen compound metabolic process biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0140014 mitotic nuclear division biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0048285 organelle fission biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0007049 cell cycle biological_process
GO:0051276 chromosome organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0007076 mitotic chromosome condensation biological_process
GO:0051301 cell division biological_process
GO:0060255 regulation of macromolecule metabolic process biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0006807 nitrogen compound metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:0008380 RNA splicing biological_process
GO:0000280 nuclear division biological_process
GO:0000793 condensed chromosome cellular_component
GO:0000794 condensed nuclear chromosome cellular_component
GO:0000796 condensin complex cellular_component
GO:0044422 obsolete organelle part cellular_component
GO:0044424 obsolete intracellular part cellular_component
GO:0044427 obsolete chromosomal part cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0044446 obsolete intracellular organelle part cellular_component
GO:0044454 obsolete nuclear chromosome part cellular_component
GO:0032991 protein-containing complex cellular_component
GO:0005622 intracellular anatomical structure cellular_component
GO:0005634 nucleus cellular_component
GO:0005654 nucleoplasm cellular_component
GO:1902494 catalytic complex cellular_component
GO:0000228 nuclear chromosome cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0005694 chromosome cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043226 organelle cellular_component
GO:0043227 membrane-bounded organelle cellular_component
GO:0043228 non-membrane-bounded organelle cellular_component
GO:0043229 intracellular organelle cellular_component
GO:0043231 intracellular membrane-bounded organelle cellular_component
GO:0043232 intracellular non-membrane-bounded organelle cellular_component
GO:0043233 organelle lumen cellular_component

KEGG: NA

Ensembl:

ensembl_id ENSDART00000194014

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061923 lncRNA downstream 15597 4670271 ~ 4673865 (-) True XLOC_030784
TCONS_00059918 lncRNA downstream 46173 4640459 ~ 4643289 (-) False XLOC_030783
TCONS_00059917 lncRNA downstream 46173 4640459 ~ 4643289 (-) True XLOC_030783
TCONS_00061922 lncRNA downstream 67399 4621430 ~ 4622063 (-) True XLOC_030782
TCONS_00061921 lncRNA downstream 67459 4621430 ~ 4622003 (-) False XLOC_030782
TCONS_00059921 lncRNA upstream 17365 4714732 ~ 4734142 (-) True XLOC_030786
TCONS_00061924 lncRNA upstream 167503 4864870 ~ 4907610 (-) True XLOC_030787
TCONS_00061925 lncRNA upstream 459032 5156399 ~ 5158173 (-) True XLOC_030791
TCONS_00061926 lncRNA upstream 601494 5298861 ~ 5301748 (-) True XLOC_030793
TCONS_00061927 lncRNA upstream 802436 5499803 ~ 5502345 (-) False XLOC_030795
TCONS_00059916 mRNA downstream 156946 4523633 ~ 4532516 (-) True XLOC_030781
TCONS_00059915 mRNA downstream 195960 4482437 ~ 4493502 (-) True XLOC_030780
TCONS_00059914 mRNA downstream 270907 4382378 ~ 4418555 (-) True XLOC_030779
TCONS_00059913 mRNA downstream 392003 4253929 ~ 4297459 (-) True XLOC_030778
TCONS_00059912 mRNA downstream 444276 4235513 ~ 4245186 (-) True XLOC_030777
TCONS_00059922 mRNA upstream 223725 4921092 ~ 4931266 (-) False XLOC_030788
TCONS_00059923 mRNA upstream 224026 4921393 ~ 4923473 (-) True XLOC_030788
TCONS_00059925 mRNA upstream 335466 5032833 ~ 5147336 (-) False XLOC_030790
TCONS_00059926 mRNA upstream 338098 5035465 ~ 5147220 (-) False XLOC_030790
TCONS_00059927 mRNA upstream 338132 5035499 ~ 5035683 (-) False XLOC_030790
TCONS_00059909 other downstream 462842 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059873 other downstream 2476674 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 2727053 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 2729262 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059866 other downstream 2736684 1952652 ~ 1952778 (-) True XLOC_030742
TCONS_00059924 other upstream 245231 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059943 other upstream 1833700 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 2231667 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 2450924 7148291 ~ 7148407 (-) True XLOC_030811
TCONS_00059951 other upstream 2734058 7431425 ~ 7431523 (-) True XLOC_030814

Expression Profile

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