RNA id: TCONS_00061508


Basic Information

Item Value
RNA id TCONS_00061508
length 909
lncRNA type inter_gene
GC content 0.41
exon number 2
gene id XLOC_030801
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 6311493 ~ 6312518 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ctttcattgtcTGCAACAGAGCGGTGTAAACATTCTGCATTTTCTCTTTCCACAGGGGAATGTTGGACTGGTTTGGAATAAAGAGGCTGTGAAATGATGCCAGACTTGCATATTTTTGTGCAAACAATCTCTTTAATCTCATAAAACTGCCCATCCTGCCCTCATCTGGCCAACATTGGAAGTTCATCTCATGCTGCTACAACTTCACAAGCTCATGCTGCCATCTGATGACCCTGATATTCTCCTGTCTGACCATCATCTTCCTCCCCCTCATCATCAGAAACCGTCTGCCGTGTCTCTCTGTGTCTCCACATGTCCCTCCTGTGCAGCTCCAGCATCCTCGGGTTTAATTAAATGGCCAGgcacgtgcacgcacacacatacacactcacgcTCAAGTGCTGCTGATGATATACccagccttaaagggatagtccacctAACATTTTGATCCCTAGTGGTGTAACGGTATATGCACTCAAACAAATGACGTTTGCTGATTGCTCTAACTACTGATATTAAATATGCTGTGTACAGTGTGTATTCGTCCCGAACCGTCACAGTAACGGGTGTCATGGTTCGGTTCATGCACTCTGATGATGAATACGGTCAATCCAGATGCACTTACCACTGGAGATAGGCTGAAAAGACCACAGCAGTGCGAAAACATAACAGTTGTGTCTGAAAATGTGACATTATTTCTTTTGTACCTTTACATCACAAGATGTTTTCAGTTCTGTAGCTGATTGTGACAAaacactagggctgggcgatattggaAAAACAAACTatcaaaatatcatgttttatatcattcgatattgataattattgaatattttttaacaatgcatttaggattattaggatttttttattttttatttaagcactttattttaatttacc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko02024 Quorum sensing
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061507 lncRNA downstream 113168 6198080 ~ 6198325 (-) True XLOC_030800
TCONS_00061931 lncRNA downstream 260768 6042066 ~ 6050725 (-) True XLOC_030799
TCONS_00061930 lncRNA downstream 807068 5499803 ~ 5504425 (-) True XLOC_030795
TCONS_00061929 lncRNA downstream 807192 5499803 ~ 5504301 (-) False XLOC_030795
TCONS_00061928 lncRNA downstream 807192 5499803 ~ 5504301 (-) False XLOC_030795
TCONS_00061510 lncRNA upstream 158507 6471025 ~ 6472754 (-) False XLOC_030804
TCONS_00061509 lncRNA upstream 158507 6471025 ~ 6472754 (-) False XLOC_030804
TCONS_00061932 lncRNA upstream 159447 6471965 ~ 6472734 (-) False XLOC_030804
TCONS_00061933 lncRNA upstream 159447 6471965 ~ 6472751 (-) True XLOC_030804
TCONS_00061934 lncRNA upstream 198796 6511314 ~ 6511839 (-) True XLOC_030806
TCONS_00059937 mRNA downstream 480456 5708576 ~ 5831037 (-) True XLOC_030798
TCONS_00059936 mRNA downstream 641614 5666864 ~ 5669879 (-) True XLOC_030797
TCONS_00059935 mRNA downstream 655654 5614620 ~ 5655839 (-) True XLOC_030796
TCONS_00059933 mRNA downstream 917158 5311993 ~ 5394335 (-) False XLOC_030794
TCONS_00059938 mRNA upstream 37810 6350328 ~ 6377865 (-) True XLOC_030802
TCONS_00059939 mRNA upstream 88909 6401427 ~ 6433577 (-) True XLOC_030803
TCONS_00059940 mRNA upstream 176742 6489260 ~ 6508250 (-) True XLOC_030805
TCONS_00059941 mRNA upstream 203223 6515741 ~ 6561376 (-) False XLOC_030807
TCONS_00059942 mRNA upstream 203692 6516210 ~ 6567464 (-) True XLOC_030807
TCONS_00059924 other downstream 1368781 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059909 other downstream 2084873 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059873 other downstream 4098705 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 4349084 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 4351293 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059943 other upstream 218549 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 616516 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 835773 7148291 ~ 7148407 (-) True XLOC_030811
TCONS_00059951 other upstream 1118907 7431425 ~ 7431523 (-) True XLOC_030814
TCONS_00059954 other upstream 1320177 7632695 ~ 7632819 (-) True XLOC_030816

Expression Profile

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