RNA id: TCONS_00061510


Basic Information

Item Value
RNA id TCONS_00061510
length 1507
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id XLOC_030804
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 6471025 ~ 6472754 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AATGGTCAACAGGCCAGTACGCGGGCGCGTGTCCGACTCCTCACGTGCTCGCGCTGCGCGTGCACTTGTTGAAAACTTCTCCGCGTGCAATTGCGGAGCACAGACGAGCCACGAAACAGAGTCGAGCGGTAAATCGCGGGCTCCTGCTCCCGTTATCGACCCAGAACGACCGCGAAACATGGACGATTTAGCTTCTCAATGGGTTGTCGGAGTCAGCCTGATTCATTGTTCacattgaggtgaagttggtgtTATTCACGTATTCGTTCGTTTTTTTAACAGTGAAAACTTGTGAAGCTACTTTGGGCACTCAATCTGAAATCGCATTTAAGTAActtatgacttcaaaacaacattagcaccattACATTAACTGTGTGTGAACACTATTGTGCTTTGATactcattggctgctaatatgattgaGATTTTGCTAATAATACTTTTCTGGATTCATATTTTTAAGGAGAATgagcaaatataaaaccaactttacctcaatgctcTTCACAGCTGCTCTTGTAACACGAAGATACGTGATTAATATCAGATCCTCACCAGCGCAAACTCACAGTAAGCTCTATATTTACCCCTAAATACAGAAGTTGATGCTAGTTAATATGCTTGTATATAGTTCCTGTCTGCTTGTAACTTCTGAAATGTGTCAACAAAACAGTGAAGTGTCAATTCACAGCCGTCCTCCAAAGTTCACTTACTATCTGCTGAAACTTAAAGTTGAACATGTACAGTTTTCTCACCATCAAGTGGTTCAAAAtctttttatgagtttctttcttcttttaggaagatattttgaagaatgctgaaattaaccgttgactttcatagtaggaaagaCGAATACAATgaacgtcaatggttacaggcgtccagctctcttcaaaatatcttattttgagttTATTAGAGGGAAGaaatgagtaaacgatgacacaTTTTTCATTTCTGCGTGAATTATCCCTCCATAAACCTAGCTTTTAGTCTTATATTGTGCTTTTGTTTTCATGTCTTTTGTGAAATGCTCAGTAAACATGGTTTCCAATGCCTTTCTGTGTCAACACCAGTCGTTGTTAGCATTTAACTAGTACTGTCTTACTGTTAGGTAGTCAATCCCGTTATCTACAGCTTTTGATGTTGTGGCTTGTTGACTTGTTGCCTGGGGCGACGAGAAAATGAGCCGCACTGCCTAATCTAACTAATCTCAATATTAGTGCCTTGAGGCTGCTGGGTTAAGAGTGACGCGCTGTTTAGTAAAGTTATTTTCGTTTATCTGTGACGACCAGGCATTTGTTTAGACGTTAATGTGGGACCAAGATCAGAAATTCACCAGGACTTTCTTATGTAATGCCAAAAATCACAGTACAGCAATTCTATTGTTACGCATGGGACATTTGCAGTATAAAAAATGTAGAAGACCAGTGATTCTTCaactttttcaccaagtaccacctcagaaaaaatagtCCCTCCAAGTgtcaccataatg

Function

GO:

id name namespace
GO:0000003 reproduction biological_process
GO:0022414 reproductive process biological_process

KEGG:

id description
ko03050 Proteasome
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061508 lncRNA downstream 158507 6311493 ~ 6312518 (-) True XLOC_030801
TCONS_00061507 lncRNA downstream 272700 6198080 ~ 6198325 (-) True XLOC_030800
TCONS_00061931 lncRNA downstream 420300 6042066 ~ 6050725 (-) True XLOC_030799
TCONS_00061930 lncRNA downstream 966600 5499803 ~ 5504425 (-) True XLOC_030795
TCONS_00061929 lncRNA downstream 966724 5499803 ~ 5504301 (-) False XLOC_030795
TCONS_00061934 lncRNA upstream 38560 6511314 ~ 6511839 (-) True XLOC_030806
TCONS_00059947 lncRNA upstream 263522 6736276 ~ 6745488 (-) True XLOC_030809
TCONS_00061511 lncRNA upstream 904228 7376982 ~ 7377405 (-) True XLOC_030813
TCONS_00061512 lncRNA upstream 1219121 7691875 ~ 7712224 (-) True XLOC_030815
TCONS_00061513 lncRNA upstream 1252310 7725064 ~ 7725275 (-) True XLOC_030818
TCONS_00059939 mRNA downstream 37448 6401427 ~ 6433577 (-) True XLOC_030803
TCONS_00059938 mRNA downstream 93160 6350328 ~ 6377865 (-) True XLOC_030802
TCONS_00059937 mRNA downstream 639988 5708576 ~ 5831037 (-) True XLOC_030798
TCONS_00059936 mRNA downstream 801146 5666864 ~ 5669879 (-) True XLOC_030797
TCONS_00059935 mRNA downstream 815186 5614620 ~ 5655839 (-) True XLOC_030796
TCONS_00059940 mRNA upstream 16506 6489260 ~ 6508250 (-) True XLOC_030805
TCONS_00059941 mRNA upstream 42987 6515741 ~ 6561376 (-) False XLOC_030807
TCONS_00059942 mRNA upstream 43456 6516210 ~ 6567464 (-) True XLOC_030807
TCONS_00059944 mRNA upstream 253401 6726155 ~ 6745511 (-) False XLOC_030809
TCONS_00059945 mRNA upstream 253787 6726541 ~ 6745454 (-) False XLOC_030809
TCONS_00059924 other downstream 1528313 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059909 other downstream 2244405 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059873 other downstream 4258237 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 4508616 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 4510825 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059943 other upstream 58313 6531067 ~ 6531182 (-) True XLOC_030808
TCONS_00059948 other upstream 456280 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 675537 7148291 ~ 7148407 (-) True XLOC_030811
TCONS_00059951 other upstream 958671 7431425 ~ 7431523 (-) True XLOC_030814
TCONS_00059954 other upstream 1159941 7632695 ~ 7632819 (-) True XLOC_030816

Expression Profile

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