RNA id: TCONS_00059941


Basic Information

Item Value
RNA id TCONS_00059941
length 4681
RNA type mRNA
GC content 0.42
exon number 7
gene id XLOC_030807
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 6515741 ~ 6567464 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCAGTGTGTTGCTATGGCTGCGGTGGTGAAGGCGACCACCAGGGAAATGGCGCTCATTAACCCAGATGATGATTCATCTCCATCCTCTGCGCTCCCAGAAGACTCCCCGAAGCCATCGCTGGGCCCAAAACCACACCTCATGCCAAAACCATTCACCCTGCAAAGAAACCCTACCGTCCGCTCAATCCGAGCCCCAAAAACCAATTTCACAAAACACCTCCAGCGAGCCTCGTCTTCGGAAACACTTCTGGATTACACCAAGCCTAAAGAAATCACACCAAACGCAAACGGCACAGTAAACGGGTCCGCTTCTACACCCCAAAAAACAGACTTGATAGATAAACCAAAAAGCTCTGAGAGCAAAAATGCAGACGAAGATGTGCAAAAAGTTCAATTCAGAAGCAGAGCAAAATCATTGAGCTCTCAAAATGAgactttaaacaaacagaaaGCGCATGATGGCGAGTCTGAAACGGATGGCAAAGTGTCTCCACGATGCTGGCCGGCCCGAAATCGTCTCTCTGTCCATCTGACGTCCAAATTCGAGTCACCTGAGACTGCTATTAGAAATGATGCTCAAATCCACAAGGCGCCACTTTCTCCACCTGCAGTGTCAGAGTCCAAACCTGCGGTGGATAAAAAGGAAATGTTAGACGAAGAGATGAGCGGAGGCAGCATTAAACGAAGGATCAGCCTCCTGTTTGACCGATCTGCAGCGTCTCAGCGCCGGGACGCTGTCAACAGAAGAGACGTCACTCCTGCTGAAATAACTGTTGACATTAAACAGAGAATCCAGAATCTGAGCTTGGACTCGCCGAGGACGCGCTCGCCATCCACTGGAGCTCCTAAAAGTCCAACATCTGAGAAGAACCAGAGCTCCTCAGATGAGCTGCTGAATGAGAGATCATCAGAAAAAGTGGAAACAGAGACAAGTATAAAACCATCAAGAACAACAGAAAATAACACTGCTACATTTGTGGAAAATAGAGAAGAAAATGATGAtgattgtgatgatgatgatgatgatggagaagAAGATATGGAGAACTCTGTCATTATGCCTGTTTACAGACGAGTTGGATTAAGCTTCGATGCAGAGAAGAAACgaaaggaagaagaagaagaaaaacaaaaaaaggatgAGCAGTTAGAGAAGGAAAGAAAGCAACGAAAAGGAGAGGAAGAGAAAAAGCAAGAAGTGGAAAGACAAAGGCAGATAGAAGAAACAAGAAAGCAAGAGGAAGAACTAAAGAGAAAAATGGAAGAAGAAAGAAGACAGGCTGAAAAAGAAatagagagacagaaagaggagGAAAGAGCGAGAATGGAGAAACAACAGAAGGAAAGAGAACTGGAAGAAAAGAGACGAAAAATTCAGGAGATGGAAAGACAGAGAAAAGAAGAAAGACAGAGACAGGAACGAGAAAAAGAAGAGAGGttgaagaaagagagagaaattgaGGAGAGGAAACGAATTGAGGAGGAAAGACTGCGACAAGAGGAGCGATTGAGACAGGAACGAGAAAAAGAGAGGGTAAAGAAAGAAAAGGAGATGGAAGAAGAGAGACAACGGGTCCAAGAGCTGGAGAGACAGAAAGAGGAGGAAAGACGgaggaaagaagaagaagaaatggaGAGAATtaggaaagaaaaagaaattgaagAAGAAAGACGAAGAATTCAAGAGTTGGAGAGACAAATGGAAGAGGAAAGATTGAGAAAAGAACAAGAAATGGAGAGAAtaaggaaagaaaaagaaatggaaGAAGAAAGACGAAGAATTCAAGAGTTGGAGAGACACATGGAAGAGGAAAGATTGAGGAAAGAACAAGAAATGGAGAGAATAAGGAAAGAAAaggaaatggaggaagaaagaagaagaattcAAGAGTTAGAGAGACAGAAAGAAGAAGACAGATTGAGAAAAGAGAGGGAAATTGcgagattaaaaaaagaaaaagaaatggaaGAAGAAAGACGAAGGATTCAAGAACTGGAGAGACAGAAAGAGGAAGAAAGACTGAGAAAGGAGCAAGAAATAGagagaataaagaaagaaaaagaaattgaagaaaaaagaCAAAGAATTCAGGAATTAGAAAGACAGAAAGAGGAAGAAAGACtgagaaaagaaagagaaatggaGAGAAtaaggaaagaaaaagaaattgaggAAGAAAGACTGAGAATTCAAGAGTTGGAGAGACAGAAAGAGGAAGAAAGACTGAGAAAGGAGCAAGAAATGGagagaataaagaaagaaaaagaaatggaaGAAGAAAGACGAAGGATTCAGAAAttagaaagacagaaagaagagGAAAGATTaaggaaagaaagagaaatgGAAGAAGAAAGACAAAGAATTCAGCAGTTGGAGAGACAGAAAGAGGAGGAGAGAATAAGAAAGGAAAAAGAATTGGAAGAAGAGAGGAGGCGAATTCAAGAGTTTGAGAGACAAAGGGAAGAGGAAAgactaaaaaaagaaagagaaatggaGAGAATGAGGAAAGAAAAGGAAGAAGAAATGGAGAGATTGAAGAAAGAAAGAGATTTGGAAGAAGAGAGGAGAAAAATTCAAGAGTTGGAAAGACAGAAAGAGGAAGAAAGGCtgagaaaagaaagagaaattgAAAGAAtaaggaaagaaaaagaaatggaaGAAGAAAGGAGGAGGATTCAAGATttagaaagacagaaagaagaagaaagattaagaaaagagagagaaatgaaaGAAGAAAGACAGAGGAAAGAAAGAGAAATGGAAGAAGAAAGACGAAGGATTCAGGAATTAGAAAGACAGAAGGAAGAAGAACGACTGAGGAAAGAAAGAGAAATAGAAAGAGTaaggaaagagaaagaaatgGAAGAAGAAAGGAGGAGGATTCAGGAAAAAGAAAGACtaagaaaagaaagagaaatggaAGAAGAAAGACGAAGGAATCAGGAATTAGAAAGACAGAAGGAAGAGGAAAAATTGAGAAAAGAAAGAGAACTGGAGAGATTAAGgaaagaaatggaggaagaaagacgAAGAATCGAGGAGATTGAAAGACAAAAAGAAAGACTGAGACATGAAGGAGAAAAAATGATGGCGATGGAAATGTGTAAATCAGCAGAGCGGCCGCAAGAAGTTCCTACGAGTTTTGATTTAATATCGTTTGACGTTGAAGAACCGTCGCCGCCTGTCTCCTCCGATTCCATGGATGTCGAAGTAATTTACGATGATTTTTCGGTAAAACCACAAAGATGGGGAACCAGAGTGAGAGATTCTCCAACAACATCTCCAACCAGAGAAACCGCTGACCTCAGTCTACAGCCACAATTAAAATACAGTACACCGGGACTCCAAGAACCAGCCGGAGATCGGGTACATGTAGAAAACCTAATCGGATTTGAGCCTGAAGCATCCAGTCCACAGAACACGTCCTATATACATACAGAAAACAGACATCCGTCTTCATCTGAGGAGGAAACTGAGTGTACGCCAGAAGATCTGCTGGAGCCAGAAACTGAATTAAATGAGGATCAGTTGAAGGACTGTGAACCAGAAGAAGATCAGGACACAGAGAATCTAATCGAGGAAACAGAGGAACAAAGTGAAAACAGTGACACTGTTGACAGTCAGGGCACAGCGAGACTCAATCAAGCCCTTCAGAGACTGAATCAAGCCAGACGGCGAAAAACATCCAGTGATTCAGAAAACACAAATACCCCAATTCAGGAGGAGCCCGAACCACTGCCTCTTCTTGAGTCCTCAGCTCCTCCATTGGACTCCAGCGTTTTACGTTCCAAGGTCGATCTGGGAAAGAAGCGAAGTATAAAGCGCTCCAGACCGTCCCGTGCCGTCCGACAGAGAGCCGCTCTGCCTGCTCTGACTGAGGGAACAAACCCCGACTGGAGGTTCTGCGACTCCACAGATGCGAAAGTTCAGATTTCTAATGGAGGGGACTCAGAATCGGAAGAGGAACCATCCCAGGACGTCACGTCTTCTCCGGCCCCCAGTCAGCCCAAAAGAGTGTCTGTGTTTCCCGGGATGAACCCTTCAGCCTTGATGGCTCAGTTGAAGCGCAGGAGTGCCGCTCTAGATTCAGATGCTCAAGCAGAAGCTGCTACCCCTCCGTCTGTTCCCTCTCGCTCTCCCCGAACACCCAGCAAGACCCTCGGCCCCCGAGTGCTGCCCCCTGCTGACGCAAAGGATGCTAGGTAAGTGGACCAGAATCTAGAATGCATGTCTGCgtctgaaatcgcctactacacaggtactgcatttgaatataAATGTACTACTCAGCCAGTAGAAAAGTGCgttctgtacagtatgaatgtcagtAGTGTGAATTGAACTCATGTACCACATCCGCCATTTTCTCAgcatcacgtgacctacccacaTCAGTTGGGTAAAGTCCAgaaacagctgaagtcagaattattagcccccctgaattgttaTTAGCCTCActgtttattatataatataataatttctgTTTATTCATAATAAACATAATGTTCATAATAAACCTAATGTTTATTATATAATAGcctcactgtttattttttcccaaatttctgtttaacggagagaagatttcttctgcacatttctaaacataatagttttaataactcatttttaataaccgatttattttatctttacataATTACAC

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0005575 cellular_component cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050208-317 Is expressed in neuromast mantle cell; neuromast support cell; and olfactory epithelium.

Ensembl:

ensembl_id ENSDART00000099570

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061934 lncRNA downstream 3902 6511314 ~ 6511839 (-) True XLOC_030806
TCONS_00061510 lncRNA downstream 42987 6471025 ~ 6472754 (-) False XLOC_030804
TCONS_00061509 lncRNA downstream 42987 6471025 ~ 6472754 (-) False XLOC_030804
TCONS_00061933 lncRNA downstream 42990 6471965 ~ 6472751 (-) True XLOC_030804
TCONS_00061932 lncRNA downstream 43007 6471965 ~ 6472734 (-) False XLOC_030804
TCONS_00059947 lncRNA upstream 174900 6736276 ~ 6745488 (-) True XLOC_030809
TCONS_00061511 lncRNA upstream 815606 7376982 ~ 7377405 (-) True XLOC_030813
TCONS_00061512 lncRNA upstream 1130499 7691875 ~ 7712224 (-) True XLOC_030815
TCONS_00061513 lncRNA upstream 1163688 7725064 ~ 7725275 (-) True XLOC_030818
TCONS_00061514 lncRNA upstream 1531909 8093285 ~ 8096026 (-) True XLOC_030822
TCONS_00059940 mRNA downstream 7491 6489260 ~ 6508250 (-) True XLOC_030805
TCONS_00059939 mRNA downstream 82164 6401427 ~ 6433577 (-) True XLOC_030803
TCONS_00059938 mRNA downstream 137876 6350328 ~ 6377865 (-) True XLOC_030802
TCONS_00059937 mRNA downstream 684704 5708576 ~ 5831037 (-) True XLOC_030798
TCONS_00059936 mRNA downstream 845862 5666864 ~ 5669879 (-) True XLOC_030797
TCONS_00059944 mRNA upstream 164779 6726155 ~ 6745511 (-) False XLOC_030809
TCONS_00059945 mRNA upstream 165165 6726541 ~ 6745454 (-) False XLOC_030809
TCONS_00059946 mRNA upstream 165415 6726791 ~ 6745442 (-) False XLOC_030809
TCONS_00059950 mRNA upstream 637381 7198757 ~ 7199998 (-) True XLOC_030812
TCONS_00059952 mRNA upstream 926688 7488064 ~ 7513082 (-) False XLOC_030815
TCONS_00059924 other downstream 1573029 4942598 ~ 4942712 (-) True XLOC_030789
TCONS_00059909 other downstream 2289121 4223515 ~ 4226620 (-) False XLOC_030776
TCONS_00059873 other downstream 4302953 2212672 ~ 2212788 (-) True XLOC_030748
TCONS_00059869 other downstream 4553332 1962282 ~ 1962409 (-) True XLOC_030744
TCONS_00059868 other downstream 4555541 1960073 ~ 1960200 (-) True XLOC_030743
TCONS_00059948 other upstream 367658 6929034 ~ 6929148 (-) True XLOC_030810
TCONS_00059949 other upstream 586915 7148291 ~ 7148407 (-) True XLOC_030811
TCONS_00059951 other upstream 870049 7431425 ~ 7431523 (-) True XLOC_030814
TCONS_00059954 other upstream 1071319 7632695 ~ 7632819 (-) True XLOC_030816
TCONS_00059964 other upstream 1411383 7972759 ~ 7972879 (-) True XLOC_030821

Expression Profile

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