RNA id: TCONS_00061529


Basic Information

Item Value
RNA id TCONS_00061529
length 303
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_030912
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 14999622 ~ 14999996 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGCGAGATCATTATCACAGGTGATTCATCAGTGACATTGGGAGGGAGAACAGGCACCTGGATAAATGAACCAAACGTCAGTTTGCGCCTGCTTGTTCTGTTGAATGCGGATGATCAAATATTTCTGCTGTCCACCTAGATGCTGCAGTACATGATGTGCACAGTATCTGAGCAAAAAAGGTGCACCCAGAGCAAACTGAAAGAGTGACTTTTAAAGTAACTGGCCTTTGGTTTTGATATAAATTTGATATTCTGGGGCTACAGAAGTGTGATATGGGTAAGGTTAAGAACAGATTTGGTGCA

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061528 lncRNA downstream 476910 14521122 ~ 14522712 (-) True XLOC_030909
TCONS_00061956 lncRNA downstream 1692917 13277241 ~ 13306705 (-) True XLOC_030893
TCONS_00060062 lncRNA downstream 1832502 13131399 ~ 13167120 (-) True XLOC_030890
TCONS_00061527 lncRNA downstream 2163015 12835526 ~ 12836607 (-) True XLOC_030888
TCONS_00060040 lncRNA downstream 2719495 12272137 ~ 12280127 (-) False XLOC_030879
TCONS_00061959 lncRNA upstream 7609 15007605 ~ 15175900 (-) False XLOC_030911
TCONS_00061960 lncRNA upstream 7609 15007605 ~ 15176026 (-) False XLOC_030911
TCONS_00060095 lncRNA upstream 44311 15044307 ~ 15176028 (-) False XLOC_030911
TCONS_00061961 lncRNA upstream 50995 15050991 ~ 15176098 (-) False XLOC_030911
TCONS_00061962 lncRNA upstream 52982 15052978 ~ 15176028 (-) False XLOC_030911
TCONS_00060094 mRNA downstream 351189 14529740 ~ 14648433 (-) True XLOC_030910
TCONS_00060093 mRNA downstream 434744 14529101 ~ 14564878 (-) False XLOC_030910
TCONS_00060092 mRNA downstream 478122 14478009 ~ 14521500 (-) False XLOC_030909
TCONS_00060091 mRNA downstream 490485 14478009 ~ 14509137 (-) False XLOC_030909
TCONS_00060090 mRNA downstream 499000 14477282 ~ 14500622 (-) False XLOC_030909
TCONS_00060101 mRNA upstream 222015 15222011 ~ 15283509 (-) False XLOC_030914
TCONS_00060103 mRNA upstream 222236 15222232 ~ 15264007 (-) True XLOC_030914
TCONS_00060104 mRNA upstream 311595 15311591 ~ 15321451 (-) False XLOC_030916
TCONS_00060105 mRNA upstream 311595 15311591 ~ 15350252 (-) False XLOC_030916
TCONS_00060106 mRNA upstream 331369 15331365 ~ 15350252 (-) True XLOC_030916
TCONS_00060087 other downstream 626686 14368100 ~ 14372936 (-) True XLOC_030906
TCONS_00060083 other downstream 754342 14245149 ~ 14245280 (-) True XLOC_030905
TCONS_00060070 other downstream 1466634 13532874 ~ 13532988 (-) True XLOC_030896
TCONS_00060061 other downstream 1879029 13110935 ~ 13120593 (-) False XLOC_030890
TCONS_00060054 other downstream 2274307 12724462 ~ 12725315 (-) True XLOC_030886
TCONS_00060102 other upstream 222019 15222015 ~ 15223457 (-) False XLOC_030914
TCONS_00060112 other upstream 734529 15734525 ~ 15734580 (-) True XLOC_030920
TCONS_00060114 other upstream 944415 15944411 ~ 15948833 (-) False XLOC_030923
TCONS_00060129 other upstream 1445353 16445349 ~ 16445465 (-) True XLOC_030930
TCONS_00060137 other upstream 1862619 16862615 ~ 16890246 (-) False XLOC_030932

Expression Profile

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