RNA id: TCONS_00061969


Basic Information

Item Value
RNA id TCONS_00061969
length 589
lncRNA type inter_gene
GC content 0.44
exon number 2
gene id XLOC_030940
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 18317903 ~ 18424637 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGTAGATCAACGGCAGACACACAGGCAAGAGCTGCCGAGAGGTGCCAAACGGCGCGTAGCACTTGACATGACGTGAATGGTCACGTGTTGGCCACCTTGGCGTTGTTGCTATTAATCTCTACACCTACCCGTGTCCTAAACGCGACGCATATCtcttgaatatatatgtatagtcTTTGATTTCATATTTTACGTCGGATTATGGTTTTGGTGTAGGCAATGACTGATGTTTTGAAAGGTGCACACCTGACATACAGTATAGCAGGCTACTATTAGTCCAAGTAAAAGCAGCCGCAGCACAAGGTAACTGTTAGCCAACGAAAAGATTTGTGTGCAGCAAATGTTGGCGAGATGTACTGTACACATTTCATTTGGACTGTTTCAACAAAAGATGGCACAAAAATACTCTGTAATGATCACCACTATCTTCCACTTGGACTTcaaagtcatttttcaaaatatggaGCCATTTTTCCCCTCTCAGAAATGATGGAACAGTCATTATGCTGCTGTTTCAGGAGGACAGAGAAAAGgggaaaccggagcacccggagattCAAGGGAATAGGGGGTGAACTTGCAAACTCAG

Function

GO:

id name namespace
GO:0007191 adenylate cyclase-activating dopamine receptor signaling pathway biological_process
GO:0008988 rRNA (adenine-N6-)-methyltransferase activity molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061967 lncRNA downstream 117805 18288810 ~ 18289576 (-) True XLOC_030939
TCONS_00060135 lncRNA downstream 1673838 16730409 ~ 16733543 (-) True XLOC_030931
TCONS_00061966 lncRNA downstream 2050441 16352997 ~ 16356940 (-) True XLOC_030927
TCONS_00061965 lncRNA downstream 2091640 16279240 ~ 16315741 (-) False XLOC_030926
TCONS_00060121 lncRNA downstream 2188604 16198544 ~ 16218777 (-) True XLOC_030925
TCONS_00061971 lncRNA upstream 359101 18783738 ~ 18784434 (-) True XLOC_030942
TCONS_00061972 lncRNA upstream 888138 19312775 ~ 19315648 (-) True XLOC_030951
TCONS_00061973 lncRNA upstream 909569 19334206 ~ 19335668 (-) False XLOC_030952
TCONS_00060171 lncRNA upstream 1018041 19442678 ~ 19444949 (-) True XLOC_030954
TCONS_00061974 lncRNA upstream 1536043 19960680 ~ 19963521 (-) False XLOC_030959
TCONS_00060146 mRNA downstream 361328 18040073 ~ 18046053 (-) True XLOC_030938
TCONS_00060145 mRNA downstream 363921 18040054 ~ 18043460 (-) False XLOC_030938
TCONS_00060144 mRNA downstream 400304 17881074 ~ 18007077 (-) True XLOC_030937
TCONS_00060143 mRNA downstream 530672 17848665 ~ 17876709 (-) True XLOC_030936
TCONS_00060142 mRNA downstream 805622 17600106 ~ 17601759 (-) True XLOC_030935
TCONS_00060147 mRNA upstream 6764 18431401 ~ 18446483 (-) False XLOC_030941
TCONS_00060148 mRNA upstream 6764 18431401 ~ 18474486 (-) False XLOC_030941
TCONS_00060149 mRNA upstream 21528 18446165 ~ 18513950 (-) True XLOC_030941
TCONS_00060150 mRNA upstream 402677 18827314 ~ 18897482 (-) False XLOC_030943
TCONS_00060151 mRNA upstream 402686 18827323 ~ 18897482 (-) True XLOC_030943
TCONS_00060141 other downstream 805175 17599870 ~ 17602206 (-) False XLOC_030935
TCONS_00060140 other downstream 1366093 17040621 ~ 17041288 (-) True XLOC_030934
TCONS_00060139 other downstream 1508334 16898923 ~ 16899047 (-) True XLOC_030933
TCONS_00060137 other downstream 1517135 16862615 ~ 16890246 (-) False XLOC_030932
TCONS_00060129 other downstream 1961916 16445349 ~ 16445465 (-) True XLOC_030930
TCONS_00060159 other upstream 584009 19008646 ~ 19008774 (-) True XLOC_030949
TCONS_00060160 other upstream 585792 19010429 ~ 19013934 (-) True XLOC_030948
TCONS_00060163 other upstream 601140 19025777 ~ 19032656 (-) False XLOC_030950
TCONS_00060164 other upstream 627268 19051905 ~ 19052497 (-) True XLOC_030950
TCONS_00060165 other upstream 909569 19334206 ~ 19336527 (-) True XLOC_030952

Expression Profile

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