RNA id: TCONS_00000052


Basic Information

Item Value
RNA id TCONS_00000052
length 621
RNA type processed_transcript
GC content 0.46
exon number 6
gene id XLOC_000023
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 532766 ~ 591331 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGACAACAAACAGACCAAACACACTCTTGTTATGAACACATGGGTTGTTTTTACATGTTAGTCACCGAATATCTTGCCAAAAATCTGTTTGCTTGCATATAAATGCCATCATTTAAACCAGATCAAAGACGATGGTTGGAAAGAGTAAAAATCAGAGAAACTGGAAGCCGCTGACCAAGTCCTCCATACTGGCCCTGAGGAACATGTTCGATATGTCCATTCTATCTGTGCTCACACTGAAAACCAAAGAGAAAGAGGAATCACAGAAACATCTCAACATCATTAAAGACCGGTTTCTGGCGAAGTGTGCGCAGCTTTCTGTTCCTCCGAGGAAACGTGGAGACATGATGAGTGCGTCGCGTCAGTTCAGCACAGAGAGTAAGAAGTCTGAACATGGAAAGAAGACGCTCCAGGCTCTAGAGGAGAACATGAGCTCGATTGTCAGCACTCTTGAGGAGATGGAGGTGAAGATGGAGAGGCTGCAGGAGAAATGCAGGATAATGAGCAGCAGAAtagaggaggaagaggaaaaaGCACAGGAGTTTCTTCAACTGTCAGAAGAAACAGTCCTGCATCTGCCAGCATTACAGTCTCGCTCAGCCGATGAGCCGACGCTACAGG

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-6520 Predicted to enable nucleotide binding activity. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL39 (mitochondrial ribosomal protein L39).

Ensembl:

ensembl_id ENSDART00000136011

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003003 lncRNA upstream 179027 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA upstream 179027 355771 ~ 358562 (+) True XLOC_000018
TCONS_00002804 lncRNA upstream 295882 237391 ~ 241707 (+) True XLOC_000015
TCONS_00002803 lncRNA upstream 300166 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002802 lncRNA upstream 302056 227253 ~ 235533 (+) False XLOC_000015
TCONS_00000055 lncRNA downstream 34471 580688 ~ 586501 (+) True XLOC_000023
TCONS_00003005 lncRNA downstream 248759 794976 ~ 898180 (+) False XLOC_000026
TCONS_00003006 lncRNA downstream 248759 794976 ~ 911551 (+) True XLOC_000026
TCONS_00003007 lncRNA downstream 469595 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA downstream 469607 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00000049 mRNA upstream 5160 524821 ~ 532429 (+) True XLOC_000022
TCONS_00000048 mRNA upstream 6654 524388 ~ 530935 (+) False XLOC_000022
TCONS_00000046 mRNA upstream 19513 514001 ~ 518076 (+) False XLOC_000021
TCONS_00000045 mRNA upstream 19516 513986 ~ 518073 (+) False XLOC_000021
TCONS_00000041 mRNA upstream 31969 494297 ~ 505620 (+) False XLOC_000020
TCONS_00000054 mRNA downstream 34425 580642 ~ 591331 (+) False XLOC_000023
TCONS_00000056 mRNA downstream 48367 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000057 mRNA downstream 48519 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000058 mRNA downstream 57910 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000059 mRNA downstream 415390 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000047 other upstream 22267 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000036 other upstream 243695 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000003 other upstream 524332 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000053 other downstream 30227 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000060 other downstream 672474 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000061 other downstream 1029266 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000067 other downstream 1165936 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 1171480 1717697 ~ 1723157 (+) False XLOC_000036

Expression Profile

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