RNA id: TCONS_00060629


Basic Information

Item Value
RNA id TCONS_00060629
length 2024
RNA type mRNA
GC content 0.46
exon number 14
gene id XLOC_031219
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 34600714 ~ 34616599 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

acacacacgaacaGTCCTCCGCTCAGACTGGAAGCAGAGTCAGTCAGCTGACCGCTCAACACAACCATGCTCTGTCTGCTCAAGTTTACCCCTCTGTTTTTGGTGGTAGCCGTATGTCACGGCTGGCTTTTTGGAGATCTTTTTGAAAAACAGAAAGAGCTGGATGAAATCTCTCTATGGCCTCTACCGCAGAAATACCAGTCGTCCGCGGTCGCTTTTAAACTCAGCGCCGCCAGCTTTCAAATCGTCCACGCCAAACAGTCCACCGCCGGACCGAGCTGCAGTCTACTCGAGAATGCATTTCGCAGATATTTTGAATACATGTTTGGAGAGCTGAAAAGGCAGGAGAAAAGCCGAAAGAAAGCGTTTGATTCAGATCTCTCGGAGCTGCAGGTATGGATCACATCAGCTGATCCGGAGTGCGACGGTTACCCGAGTCTTCGAACCGACGAGTCATATTCGCTGTCGGTTGATGAAACCTCAGCTGTGCTCAAAGCTGCTAATGTATGGGGAGCTTTGCGAGgACTGGAAACATTCAGCCAGTTGGTCTATGAGGATGACTATGGAGTTAGAAATATTAATAAGACCGACATATCAGATTTTCCACGGTTTGCCCACCGAGGAATCCTTCTGGACTCGTCTCGCCATTTTCTGCCACTCAAAGTCATTTTGGCCAACTTGgaagcTATGGCCATGAACAAGTTTAACGTCTTCCACTGGCACATTGTGGATGATCCGTCGTTTCCTTTTATGAGCCGTACTTTCCCAGAGTTGAGCCAAAAGGGAGCCTATCACCCATTTACACATGTGTACACTCCATCTGATGTGAAGATGGTCATTGAATTTGCTCGCATGAGGGGGATCAGGGTCGTTGCGGAGTTCGACACCCCAGGGCACACGCAGTCATGGGGCAATGGCATAAAGGATCTGCTAACACCTTGTTACAGTGGCTCTAGTCCTTCAGGATCATTTGGGCCCGTGAACCCCATCTTAAACTCCTCTTATGAGTTCATGGCACAGCTTTTCAAAGAGATCAGCACCGTCTTTCCTGACGCTTACATTCACCTAGGGGGAGATGAGGTCGACTTTTCTTGTTGGAAGTCCAATCCTGATATTCAGAAGTTTATGAATCAGCAAGGCTTTGGCACAGACTACAGCAAACTGGAGTCCTTCTACATTCAAAGGTTACTTGATATTGTGGCTGCTACCAAAAAAGGTTACATGGTGTGGCAGGAGGTGTTTGATAACGGGGTCAAGCTAAAGGATGACACTGTTGTGGAGGTGTGGAAAGGGAACGATATGAAGGAGGAGCTCCAGAATGTGACTGGGGCAGGATTTACAACCATTCTTTCTGCCCCTTGGTACCTGGACTACATTAGCTATGGACAGGACTGGCAACGCTACTACAAAGTTGAGCCACTTGATTTCACTGGCACAGATGCACAGAAGAAGCTGGTGATTGGTGGAGAGGCTTGTCTTTGGGGAGAGTATGTGGACGCCACCAACCTCACTCCTCGACTCTGGCCAAGAGCCAGTGCCGTCGCTGAGAGGTTATGGAGTGATGCAAGCGTGACCGATGTCGGAAATGCTTATACTCGCCTGGCCCAGCATCGCTGCCGCATGGTCAGGAGAGGCATACCTGCAGAACCTCTATTTGTTGGCCACTGCCGTCATGAGTACAAGGGTCTGTGAATGCCATGATTTAGTTCACAGTAGACGACTAAAGGGAAGgacaaaacagtttttatttttacagattaAACCATGTTAGCCATTTGGAGAACTATGATTTGCTGTTATATGCACTGAGCCAGTTATCTAAGACTTGATGTTTGTGATTTTTACCTATACAAAGTTTTACTACAATACTTAGGTTTCAGGTTTATTAAATGGTAAGTAATATTCCTGTGAAAACATTTTATGGAATGTGTTTTATAATGAATGCTAGGTGTATTCTGAGGGTTTACATGATTGTAACACTGcactaaatttatatatttaaataaatacgaTTTCTGAAAGCA

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0001525 angiogenesis biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds molecular_function
GO:0004563 beta-N-acetylhexosaminidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0016798 hydrolase activity, acting on glycosyl bonds molecular_function
GO:0015929 hexosaminidase activity molecular_function
GO:0102148 N-acetyl-beta-D-galactosaminidase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-2333 Enables hexosaminidase activity. Acts upstream of or within angiogenesis. Predicted to be located in lysosome. Used to study lysosomal storage disease. Human ortholog(s) of this gene implicated in Sandhoff disease and spinal muscular atrophy. Orthologous to human HEXB (hexosaminidase subunit beta).

Ensembl:

ensembl_id ENSDART00000050271

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060610 lncRNA downstream 1313130 33284809 ~ 33287584 (-) False XLOC_031208
TCONS_00060607 lncRNA downstream 1313141 33284503 ~ 33287573 (-) False XLOC_031208
TCONS_00060609 lncRNA downstream 1313153 33284721 ~ 33287561 (-) False XLOC_031208
TCONS_00060599 lncRNA downstream 1326299 33269436 ~ 33274415 (-) False XLOC_031207
TCONS_00062041 lncRNA downstream 1672795 32922656 ~ 32927919 (-) True XLOC_031200
TCONS_00062042 lncRNA upstream 585967 35202566 ~ 35206296 (-) True XLOC_031225
TCONS_00060651 lncRNA upstream 906810 35523409 ~ 35540980 (-) False XLOC_031229
TCONS_00060652 lncRNA upstream 910158 35526757 ~ 35540895 (-) True XLOC_031229
TCONS_00060655 lncRNA upstream 1108948 35725547 ~ 35728227 (-) True XLOC_031230
TCONS_00062043 lncRNA upstream 2205275 36821874 ~ 36829073 (-) True XLOC_031238
TCONS_00060626 mRNA downstream 415217 34066591 ~ 34185497 (-) False XLOC_031217
TCONS_00060625 mRNA downstream 415599 34066591 ~ 34185115 (-) False XLOC_031217
TCONS_00060624 mRNA downstream 640846 33940215 ~ 33959868 (-) True XLOC_031216
TCONS_00060623 mRNA downstream 665318 33879807 ~ 33935396 (-) True XLOC_031215
TCONS_00060620 mRNA downstream 714219 33680145 ~ 33886495 (-) False XLOC_031214
TCONS_00060633 mRNA upstream 211015 34827614 ~ 34875858 (-) False XLOC_031220
TCONS_00060634 mRNA upstream 212898 34829497 ~ 34964830 (-) False XLOC_031220
TCONS_00060635 mRNA upstream 213611 34830210 ~ 34921046 (-) False XLOC_031220
TCONS_00060638 mRNA upstream 370849 34987448 ~ 34993242 (-) False XLOC_031222
TCONS_00060639 mRNA upstream 370849 34987448 ~ 34993245 (-) False XLOC_031222
TCONS_00060628 other downstream 362691 34237907 ~ 34238023 (-) True XLOC_031218
TCONS_00060627 other downstream 450592 34142593 ~ 34150122 (-) True XLOC_031217
TCONS_00060622 other downstream 735514 33796998 ~ 33865200 (-) True XLOC_031214
TCONS_00060621 other downstream 775243 33784860 ~ 33825471 (-) False XLOC_031214
TCONS_00060613 other downstream 1314056 33286587 ~ 33286658 (-) True XLOC_031210
TCONS_00060636 other upstream 217379 34833978 ~ 34834093 (-) True XLOC_031221
TCONS_00060637 other upstream 302392 34918991 ~ 34964787 (-) True XLOC_031220
TCONS_00060656 other upstream 1206819 35823418 ~ 35823548 (-) True XLOC_031231
TCONS_00060682 other upstream 2650648 37267247 ~ 37268199 (-) True XLOC_031247
TCONS_00060692 other upstream 3274008 37890607 ~ 37894891 (-) False XLOC_031255

Expression Profile

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