RNA id: TCONS_00062048


Basic Information

Item Value
RNA id TCONS_00062048
length 729
lncRNA type inter_gene
GC content 0.43
exon number 2
gene id XLOC_031249
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37480447 ~ 37483020 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGGAGTTACCATGCTAGTTAATGGTAAACAGGTTTTAATAAACTTCTAGGACATATCTGTGCCTAATTTTGAGGAAACACAGTGACATTTACATGTACAGCTGACAAAAGAGTTAACAGGATATTAACAGATCATCTGTTGCCGGGAATGGGATCATCTGCAGAGGAAGAGTGTTCTGAAACACCGGACATAGACGATGACTTCTGCGGTATCAAATGATGGAGATGGATGACCAGATGGACCAGGGGGACCGGAGGATAAAGCAGAGAATCCAGGCACACAGATATGCGGATAGAGGATCGACGACAACCACAGGAGGGACCAGGAGAAACCAGGAGGGAGAGATGCAGACACTGGAAATCGAGAGAAGGAAGTAAATCTAGaactagataaaaaaaatactgaccATAGAGATAGTGCTGTCTTCCGTAATAGCAAAGAGGCAGGACACTGAGTGAGGGCTGGTGATTGTTCTTATGGTGCGGGAGTGATGATTGGGAATGACGTGTTTATGATTAGAATTCAGATGACAGTGATCGAGGTGACTGGGAGTAGGGATAACCTGGCCTGGCTGTGGCAGTATTAAAGTGAAGAAAGATATTATTAAAGCTGTCATGGCTGCATGGCAATCATGTTTATGTCAGATTTATGACAAGGTATGCTGTCTttataatgtcaagttgtcataacaaaggtAATTCCAGGTTGTGATGTTTTTTAAGTCACG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062046 lncRNA downstream 208136 37266944 ~ 37272311 (-) False XLOC_031247
TCONS_00062045 lncRNA downstream 215952 37249544 ~ 37264495 (-) True XLOC_031246
TCONS_00060669 lncRNA downstream 536472 36934568 ~ 36943975 (-) True XLOC_031242
TCONS_00062044 lncRNA downstream 573068 36903146 ~ 36907379 (-) True XLOC_031240
TCONS_00062043 lncRNA downstream 651374 36821874 ~ 36829073 (-) True XLOC_031238
TCONS_00061540 lncRNA upstream 109256 37592276 ~ 37603735 (-) True XLOC_031250
TCONS_00062049 lncRNA upstream 225682 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00061541 lncRNA upstream 407757 37890777 ~ 37894891 (-) False XLOC_031255
TCONS_00061542 lncRNA upstream 622432 38105452 ~ 38106799 (-) True XLOC_031262
TCONS_00062050 lncRNA upstream 767024 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00060683 mRNA downstream 139403 37316683 ~ 37341044 (-) True XLOC_031248
TCONS_00060679 mRNA downstream 228336 37132016 ~ 37252111 (-) False XLOC_031246
TCONS_00060678 mRNA downstream 232793 37132016 ~ 37247654 (-) False XLOC_031246
TCONS_00060684 mRNA upstream 334850 37817870 ~ 37820878 (-) True XLOC_031252
TCONS_00060685 mRNA upstream 381685 37864705 ~ 37881345 (-) False XLOC_031253
TCONS_00060686 mRNA upstream 384114 37867134 ~ 37875636 (-) False XLOC_031253
TCONS_00060687 mRNA upstream 386889 37869909 ~ 37871526 (-) True XLOC_031253
TCONS_00060688 mRNA upstream 401002 37884022 ~ 37886077 (-) False XLOC_031254
TCONS_00060682 other downstream 212248 37267247 ~ 37268199 (-) True XLOC_031247
TCONS_00060656 other downstream 1656899 35823418 ~ 35823548 (-) True XLOC_031231
TCONS_00060637 other downstream 2515660 34918991 ~ 34964787 (-) True XLOC_031220
TCONS_00060636 other downstream 2646354 34833978 ~ 34834093 (-) True XLOC_031221
TCONS_00060631 other downstream 2864481 34603814 ~ 34615966 (-) False XLOC_031219
TCONS_00060692 other upstream 407587 37890607 ~ 37894891 (-) False XLOC_031255
TCONS_00060699 other upstream 465834 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other upstream 470316 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060704 other upstream 552317 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060729 other upstream 1007326 38490346 ~ 38506648 (-) True XLOC_031273