RNA id: TCONS_00060692


Basic Information

Item Value
RNA id TCONS_00060692
length 547
RNA type nonsense_mediated_decay
GC content 0.50
exon number 6
gene id XLOC_031255
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37888095 ~ 37900395 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAAATCCAACTCACCTATGTTTCAGAGTGTGAACAGTCAGCTTGTAAACAACATCCAGGGGAGAGTTAACACTAGTTCATCGTGTCCCGATCAGCAGAGTGTGTCCCTGCAGTGCTGCGATTGTGGAAGGCCACCAGTTTCATCAAGGATTATTGGGGGAAGCGTGGCTGCTGAGGGTCACTGGCCATGGCAGGCCAGTCTGCATTTTCAAGGAAAGCACTCATGTGGAGGATCTCTGGTGGCTCCAGACTTTATCATCACTGCTGCTCACTGCTTCCCCAAGCGATGTAGAGCCCATATGCCTGCCTGTGATTGGCCAGACGTTTCCACCTGCCAAACAATGCTGGACAACTGGTTTTGGAGTTATTCGACAAGGCAGTAataGTGTTTCCACTTCTCTAATGGAGGTCACAGTAAGCCTGATAGACTCGAGTGTGTGTaactcacctaatgtttacaatGGAGAAATCACCGAGAACATGCAGTGTGCTGGAGACCTTAGAGGAGGAAAAGACTCGTGCCAGGGTGACAGTGGTGGTCCATTG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-090309-2 Predicted to enable scavenger receptor activity and serine-type endopeptidase activity. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMPRSS13 (transmembrane serine protease 13).

Ensembl:

ensembl_id ENSDART00000136298

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062049 lncRNA downstream 178757 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00061540 lncRNA downstream 286872 37592276 ~ 37603735 (-) True XLOC_031250
TCONS_00062048 lncRNA downstream 407587 37480447 ~ 37483020 (-) True XLOC_031249
TCONS_00062047 lncRNA downstream 407880 37480447 ~ 37482727 (-) False XLOC_031249
TCONS_00062046 lncRNA downstream 618296 37266944 ~ 37272311 (-) False XLOC_031247
TCONS_00061542 lncRNA upstream 210561 38105452 ~ 38106799 (-) True XLOC_031262
TCONS_00062050 lncRNA upstream 355153 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00060719 lncRNA upstream 355153 38250044 ~ 38255744 (-) True XLOC_031269
TCONS_00062051 lncRNA upstream 719977 38614868 ~ 38633719 (-) True XLOC_031276
TCONS_00062052 lncRNA upstream 726066 38620957 ~ 38622971 (-) True XLOC_031277
TCONS_00060688 mRNA downstream 4530 37884022 ~ 37886077 (-) False XLOC_031254
TCONS_00060689 mRNA downstream 4544 37884556 ~ 37886063 (-) True XLOC_031254
TCONS_00060685 mRNA downstream 9262 37864705 ~ 37881345 (-) False XLOC_031253
TCONS_00060686 mRNA downstream 14971 37867134 ~ 37875636 (-) False XLOC_031253
TCONS_00060687 mRNA downstream 19081 37869909 ~ 37871526 (-) True XLOC_031253
TCONS_00060694 mRNA upstream 23919 37918810 ~ 37935621 (-) False XLOC_031256
TCONS_00060695 mRNA upstream 24096 37918987 ~ 37933983 (-) False XLOC_031256
TCONS_00060696 mRNA upstream 38994 37933885 ~ 37935621 (-) False XLOC_031256
TCONS_00060697 mRNA upstream 39033 37933924 ~ 37935607 (-) True XLOC_031256
TCONS_00060698 mRNA upstream 53392 37948283 ~ 37959874 (-) False XLOC_031257
TCONS_00060682 other downstream 622408 37267247 ~ 37268199 (-) True XLOC_031247
TCONS_00060656 other downstream 2067059 35823418 ~ 35823548 (-) True XLOC_031231
TCONS_00060637 other downstream 2925820 34918991 ~ 34964787 (-) True XLOC_031220
TCONS_00060636 other downstream 3056514 34833978 ~ 34834093 (-) True XLOC_031221
TCONS_00060631 other downstream 3274641 34603814 ~ 34615966 (-) False XLOC_031219
TCONS_00060699 other upstream 53963 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other upstream 58445 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060704 other upstream 140446 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060729 other upstream 595455 38490346 ~ 38506648 (-) True XLOC_031273
TCONS_00060736 other upstream 802605 38697496 ~ 38705831 (-) True XLOC_031280

Expression Profile

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