RNA id: TCONS_00061541


Basic Information

Item Value
RNA id TCONS_00061541
length 526
lncRNA type read_through
GC content 0.49
exon number 5
gene id XLOC_031255
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37888095 ~ 37900395 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAAATCCAACTCACCTATGTTTCAGAGTGTGAACAGTCAGCTTGTAAACAACATCCAGGGGAGAGTTAACACTAGTTCATCGTGTCCCGATCAGCAGAGTGTGTCCCTGCAGTGCTGCGATTGTGGAAGGCCACCAGTTTCATCAAGGATTATTGGGGGAAGCGTGGCTGCTGAGGGTCACTGGCCATGGCAGGCCAGTCTGCATTTTCAAGGAAAGCACTCATGTGGAGGATCTCTGGTGGCTCCAGACTTTATCATCACTGCTGCTCACTGCTTCCCCAAGCGATGTAGAGCCCATATGCCTGCCTGTGATTGGCCAGACGTTTCCACCTGCCAAACAATGCTGGACAACTGGTTTTGGAGTTATTCGACAAGGCAGTAataGTGTTTCCACTTCTCTAATGGAGGTCACAGTAAGCCTGATAGACTCGAGTGTGTGTaactcacctaatgtttacaatGGAGAAATCACCGAGAACATGCAGTGTGCTGGAGACCTTAGAGGAGGAAAAGACTCGTGCCAG

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004252 serine-type endopeptidase activity molecular_function
GO:0016787 hydrolase activity molecular_function
GO:0008233 peptidase activity molecular_function
GO:0008236 serine-type peptidase activity molecular_function
GO:0005044 scavenger receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062049 lncRNA downstream 178927 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00061540 lncRNA downstream 287042 37592276 ~ 37603735 (-) True XLOC_031250
TCONS_00062048 lncRNA downstream 407757 37480447 ~ 37483020 (-) True XLOC_031249
TCONS_00062047 lncRNA downstream 408050 37480447 ~ 37482727 (-) False XLOC_031249
TCONS_00062046 lncRNA downstream 618466 37266944 ~ 37272311 (-) False XLOC_031247
TCONS_00061542 lncRNA upstream 210561 38105452 ~ 38106799 (-) True XLOC_031262
TCONS_00062050 lncRNA upstream 355153 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00060719 lncRNA upstream 355153 38250044 ~ 38255744 (-) True XLOC_031269
TCONS_00062051 lncRNA upstream 719977 38614868 ~ 38633719 (-) True XLOC_031276
TCONS_00062052 lncRNA upstream 726066 38620957 ~ 38622971 (-) True XLOC_031277
TCONS_00060688 mRNA downstream 4700 37884022 ~ 37886077 (-) False XLOC_031254
TCONS_00060689 mRNA downstream 4714 37884556 ~ 37886063 (-) True XLOC_031254
TCONS_00060685 mRNA downstream 9432 37864705 ~ 37881345 (-) False XLOC_031253
TCONS_00060686 mRNA downstream 15141 37867134 ~ 37875636 (-) False XLOC_031253
TCONS_00060687 mRNA downstream 19251 37869909 ~ 37871526 (-) True XLOC_031253
TCONS_00060694 mRNA upstream 23919 37918810 ~ 37935621 (-) False XLOC_031256
TCONS_00060695 mRNA upstream 24096 37918987 ~ 37933983 (-) False XLOC_031256
TCONS_00060696 mRNA upstream 38994 37933885 ~ 37935621 (-) False XLOC_031256
TCONS_00060697 mRNA upstream 39033 37933924 ~ 37935607 (-) True XLOC_031256
TCONS_00060698 mRNA upstream 53392 37948283 ~ 37959874 (-) False XLOC_031257
TCONS_00060682 other downstream 622578 37267247 ~ 37268199 (-) True XLOC_031247
TCONS_00060656 other downstream 2067229 35823418 ~ 35823548 (-) True XLOC_031231
TCONS_00060637 other downstream 2925990 34918991 ~ 34964787 (-) True XLOC_031220
TCONS_00060636 other downstream 3056684 34833978 ~ 34834093 (-) True XLOC_031221
TCONS_00060631 other downstream 3274811 34603814 ~ 34615966 (-) False XLOC_031219
TCONS_00060699 other upstream 53963 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other upstream 58445 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060704 other upstream 140446 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060729 other upstream 595455 38490346 ~ 38506648 (-) True XLOC_031273
TCONS_00060736 other upstream 802605 38697496 ~ 38705831 (-) True XLOC_031280

Expression Profile

//