RNA id: TCONS_00060699


Basic Information

Item Value
RNA id TCONS_00060699
length 1344
RNA type processed_transcript
GC content 0.48
exon number 4
gene id XLOC_031257
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 37948283 ~ 37963763 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTGTGCATTGAAGATTATACAATTCATGAATGTCTGCAGTGACTGGTACAGACAGGGATGATCCCGATAATGTTAATCTAATGATCTAACGGAGAAGAATGAATCAAATAGCGGGACAAAAGAAAAGGCAGCACATTGCCGGGCGCTCGACAAACGGGTCTCTATGCGCGCCTCCTCCTCTCGACTGACCTGGCGACAGTGTTTACAGATCCCGAACGAGCTGCGGGTGTGCAGCAGGGCAGGGCTCCCTCAATCACGCACAGCAGCACCGCAGTCCAGTCCACTGAACGACTGTCCGGGGAAGAAGATGCGGACGATTGTTTCTGCTGCCGCCGCGCACCCCGACTTTGCTGTTCCAGCCCTGCCTTAAAGAAATGCAAGCTCACGTGACAGTGTTGGCTGTTTAATAATGGTGTTGGGTGGTTTAATTAAGCGGTGATGAAGCGCGACGTCTTTTCAAGAAATCACAGTAAATGTTTGATTATGTAAAGCGAATAGCATCCAGCCAACCACCTCCCGCTTCCCTGCGCAACCGCCCTCGCACTTTCTGGAAGCCTCACTTCCGCCTACAGCCTTCGTCACGCACTTCCCATTCAGACCACCCGTCCCCATGAAGGCAAAATACAGGCGAGAGCTGTGACTGGAACACACACAGGTGTATATCAGGTGGAAGGAATGGAGGTGTTTACATCTTCAGAGTTGGAGGCAGTCAATGGGACAGAAATACGTctcaaatgtacatttaaatctaACCGTCCGCTCTCTGAAGAAAGGACCTCTGTATCCTGGAGCTTCATGCCACTTGGAAAGACGAAAGAAGAACCTtttttccactacCAGGGACATGCATATCTTCCTCCTGGCGGCCTGTTTAAGGATCATGTGGTATGGTCTGGTGATGTAATGAAGGGTGACGGATCCATCACACTGCAGGATGTGCAGTTCAGCTTTAATGGTACCTACAGCTGCCAAGTCCTAAATCCGCCCGACATCCAGGGCTTTGCAGGAGAGATCAAACTCCGAGTCGTTCAGAAAGtttcATTCTCTGAAATCGGGATTCTGGCTATAGCTGTGGGTGGATCGATTGGCGTCATTCTCCTCATTCTCATCATCTACATCGTTGTGCGGGTATTTCGGAGACGAGAAGAGGACATGACCGTTGAGACGGAGGACCACAGGTTAAAGGATCAGGTTTTGTGAAAGAGGATTTTTGACTCTGGGATTTAGTCTGCTTTTCGATTCCTGTCTGGGATATGACTAGTGATATAAGAAGTAATAACATATTTTGCCACAGAATCCTCTGATTATATGAGCAgaatatattgcagaatatctTGAAACCAT

Function

GO:

id name namespace
GO:0098609 cell-cell adhesion biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005515 protein binding molecular_function
GO:0042802 identical protein binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-8774 Enables identical protein binding activity. Predicted to be involved in cell-cell adhesion. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including digestive system; epidermis; periderm; pronephric duct; and sensory system. Human ortholog(s) of this gene implicated in autosomal recessive nonsyndromic deafness 111. Orthologous to human MPZL2 (myelin protein zero like 2).

Ensembl:

ensembl_id ENSDART00000140992

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061541 lncRNA downstream 53963 37890777 ~ 37894891 (-) False XLOC_031255
TCONS_00062049 lncRNA downstream 237004 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00061540 lncRNA downstream 345119 37592276 ~ 37603735 (-) True XLOC_031250
TCONS_00062048 lncRNA downstream 465834 37480447 ~ 37483020 (-) True XLOC_031249
TCONS_00062047 lncRNA downstream 466127 37480447 ~ 37482727 (-) False XLOC_031249
TCONS_00061542 lncRNA upstream 141689 38105452 ~ 38106799 (-) True XLOC_031262
TCONS_00062050 lncRNA upstream 286281 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00060719 lncRNA upstream 286281 38250044 ~ 38255744 (-) True XLOC_031269
TCONS_00062051 lncRNA upstream 651105 38614868 ~ 38633719 (-) True XLOC_031276
TCONS_00062052 lncRNA upstream 657194 38620957 ~ 38622971 (-) True XLOC_031277
TCONS_00060694 mRNA downstream 13233 37918810 ~ 37935621 (-) False XLOC_031256
TCONS_00060696 mRNA downstream 13233 37933885 ~ 37935621 (-) False XLOC_031256
TCONS_00060697 mRNA downstream 13247 37933924 ~ 37935607 (-) True XLOC_031256
TCONS_00060695 mRNA downstream 14871 37918987 ~ 37933983 (-) False XLOC_031256
TCONS_00060691 mRNA downstream 48459 37888114 ~ 37900395 (-) False XLOC_031255
TCONS_00060701 mRNA upstream 18037 37981800 ~ 37989179 (-) False XLOC_031258
TCONS_00060702 mRNA upstream 18354 37982117 ~ 37997809 (-) False XLOC_031258
TCONS_00060703 mRNA upstream 27750 37991513 ~ 37997774 (-) True XLOC_031258
TCONS_00060705 mRNA upstream 97196 38060959 ~ 38064065 (-) False XLOC_031260
TCONS_00060706 mRNA upstream 97350 38061113 ~ 38063585 (-) True XLOC_031260
TCONS_00060692 other downstream 53963 37890607 ~ 37894891 (-) False XLOC_031255
TCONS_00060682 other downstream 680655 37267247 ~ 37268199 (-) True XLOC_031247
TCONS_00060656 other downstream 2125306 35823418 ~ 35823548 (-) True XLOC_031231
TCONS_00060637 other downstream 2984067 34918991 ~ 34964787 (-) True XLOC_031220
TCONS_00060636 other downstream 3114761 34833978 ~ 34834093 (-) True XLOC_031221
TCONS_00060704 other upstream 71574 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060729 other upstream 526583 38490346 ~ 38506648 (-) True XLOC_031273
TCONS_00060736 other upstream 733733 38697496 ~ 38705831 (-) True XLOC_031280
TCONS_00060742 other upstream 834441 38798204 ~ 38798318 (-) True XLOC_031285
TCONS_00060743 other upstream 850401 38814164 ~ 38824346 (-) True XLOC_031283

Expression Profile

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