RNA id: TCONS_00061542


Basic Information

Item Value
RNA id TCONS_00061542
length 219
lncRNA type sense_over
GC content 0.51
exon number 2
gene id XLOC_031262
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38104901 ~ 38107741 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACAACCCTGTCAACACCTCTGCATCTCCGAATGATGGACAAAATCCAGATCCAGCAAGAACATGCCCTGTTTGTTTGTCTGCGCTGAATCCTGCACGCATGAATGGCCAATCTAATGATGAACTGCTTCAATGTCCACGATGCTCCATCCTGTGTGGTTCTTGTCTTTACCCCTGCACTTCTGCCGTCTGCACCAACAAGCTGTGTGCGCTGGTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061541 lncRNA downstream 210561 37890777 ~ 37894891 (-) False XLOC_031255
TCONS_00062049 lncRNA downstream 393602 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00061540 lncRNA downstream 501717 37592276 ~ 37603735 (-) True XLOC_031250
TCONS_00062048 lncRNA downstream 622432 37480447 ~ 37483020 (-) True XLOC_031249
TCONS_00062047 lncRNA downstream 622725 37480447 ~ 37482727 (-) False XLOC_031249
TCONS_00062050 lncRNA upstream 143245 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00060719 lncRNA upstream 143245 38250044 ~ 38255744 (-) True XLOC_031269
TCONS_00062051 lncRNA upstream 508069 38614868 ~ 38633719 (-) True XLOC_031276
TCONS_00062052 lncRNA upstream 514158 38620957 ~ 38622971 (-) True XLOC_031277
TCONS_00062053 lncRNA upstream 665548 38772347 ~ 38773486 (-) False XLOC_031282
TCONS_00060707 mRNA downstream 11322 38088594 ~ 38094130 (-) True XLOC_031261
TCONS_00060705 mRNA downstream 41387 38060959 ~ 38064065 (-) False XLOC_031260
TCONS_00060706 mRNA downstream 41867 38061113 ~ 38063585 (-) True XLOC_031260
TCONS_00060702 mRNA downstream 107643 37982117 ~ 37997809 (-) False XLOC_031258
TCONS_00060703 mRNA downstream 107678 37991513 ~ 37997774 (-) True XLOC_031258
TCONS_00060709 mRNA upstream 3585 38110384 ~ 38121612 (-) False XLOC_031263
TCONS_00060711 mRNA upstream 3585 38110384 ~ 38122126 (-) False XLOC_031263
TCONS_00060710 mRNA upstream 3585 38110384 ~ 38122126 (-) True XLOC_031263
TCONS_00060712 mRNA upstream 16834 38123633 ~ 38161033 (-) False XLOC_031264
TCONS_00060713 mRNA upstream 16842 38123641 ~ 38155005 (-) True XLOC_031264
TCONS_00060704 other downstream 67235 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060699 other downstream 141689 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other downstream 145473 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060692 other downstream 210561 37890607 ~ 37894891 (-) False XLOC_031255
TCONS_00060682 other downstream 837253 37267247 ~ 37268199 (-) True XLOC_031247
TCONS_00060729 other upstream 383547 38490346 ~ 38506648 (-) True XLOC_031273
TCONS_00060736 other upstream 590697 38697496 ~ 38705831 (-) True XLOC_031280
TCONS_00060742 other upstream 691405 38798204 ~ 38798318 (-) True XLOC_031285
TCONS_00060743 other upstream 707365 38814164 ~ 38824346 (-) True XLOC_031283
TCONS_00060744 other upstream 785823 38892622 ~ 38892759 (-) True XLOC_031286

Expression Profile

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