RNA id: TCONS_00060710


Basic Information

Item Value
RNA id TCONS_00060710
length 2015
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_031263
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38110384 ~ 38122126 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTAAAGTGTCGCTGATACTAACACAGGATAATTCATACCGTGCCAACGTTGTTTTTAAATTGAAGACAAGCTCCTTCAAGAAACCAAACGCCTTATTTGACCATAGGAATAGTTTGCTTATGGTTTATTCCCAATTATGTGCAGCCGATAAAGCTCtttcttctttaaaaagacgAACACAATTTCGGCTAAATCGACGGAGAACTCACTTGACATGCACTTCACGGACTTCCACGGACTACTACTGTAACACAAGCCTGGCCTGTGAGGAGCAAATTCACCCATCCACCCACCCGTTCATCCACCCACGCGGTGTGAAATCCACACCCCCTCAAGAGTGCAGCGAGGGAAACAAAAGTACCATTGTGCACTTACAGGGATGGAGGACAGGAGGCACCTGCCTCCAGATGGAGGTGGAAACCTCAAGCGCTCCTCCCCAGCAGAGTGTGGTACAGAGGAGAGAGCGGTCAGCAAGGAGCAGGGAGACCCTGAGACCTCCACACCAATGCGTGTGAGAAAAGATGATCTCTGTGACGTTCCCCGCAAGGTGCCTCGTTTCCAGTATGTGGATTTCCCTTCCCTGCACCAGTGCATCCAGCAGCTTTCTGTGCCTCCTCTGAACGGCTGGCTGGGATCCTGCTCGCTGGCAAAAGCCCCAAACTACAGGCCTGCCAGTCCCAAGGAGAAGGTGCCCAAGTTTAAATACGTGGATTATCCATCTCTCCACCACTGCATTCAGCAGCTGTCTGTGCCTCCACTTGAAAGCTGGAGCGCAGGGCTGGTCAGGTTTAATGCAGAGGGGGGACAACAGAGGCCCTCACAAGTTGGGACAGTGAAGAAGAGCCAGAGAAATGATGGAGGAGATCAAAACACCCAGGACAGAAGTAGAGGCACAGCATTTACTTTCGAGAGAGACACTCACAGCTCAGTCTCAGGCAGGGAGGAGGCCCAACAGAGGATGGAGAAAAGTAAACCAGAAGCTGGTCTGCGATCAGAGTACAGTTGCAGGTTTGAATCTGGTTCTGGATCTCAGAGCAACACGGCAGTGATGAGAAACGTCAGACCGTCTGTGATTAGCATGGTACACACAGATAAACAGAAGCACTGGACAAAGTCAGATCACTTGGAAGAACAGTTGAACTCTCCAGATTCAGTTGGACGGGTGCCGTGGAGTACCCTCCCAGAGTCAGTCTGCCCATTCTGCCAACAGATGTTCACAAACCCAGAGCAGTTCAGGGCTCACCAGCGGAGTCACAGAGATAAGAGACCAAACTGATGTGCAGAAACACTGAGAGAGAGCTGCATCTGGCGAACAGTTACCGCCACATCAGGAATCTCATCATCAGAGGCCTTCTCGTGTTGGCTGTAGTGGTGATCGCTGGCAGGATCAAAGACACGTTAAACACATTAGACAGTTTGGGTTCAGACCTTAGGGAGAATGCAAGCCTTAGTCTTGACTGACGGTGTGAAGTCTAAAAAGGCCCGACAGATACATACAAGCATACAATCTGGATGCTCgactgcacgcacacacatgctcacacacaaggGGGCTGACATACAAACACATAGCAAGCGTGTCCTATTTATGGTTCAGGAGAGGTCAATATTTACTGCCCACACAAGAACCCTCAGACATAATGGGGTTTCAGCTCAAGGCTGAGGATTAGAAGCAGATTTACAGTCTCTTCCGCTCATATCTGCGTGTTTACAGGGCTTGAAGGACTGGTGCTTAACAGGATGGCTTTTATTACATACATGTTCCCCACACTGTGTGCATGGCGGCAGGCTAAACATTTAGCTATGGGTGCCTACAGAATAATGGTTATGTTAATGCTGCACAAACAAACAGGCTTGttaataatttgttactttagctttttgttattttgtatttttatgttttttggaaGTTAATGTCTAGTGGCTTCAAGCTGGTAGCTTTCAATATTACAAATGTACCGCTTGTTTTCAAGTGTTTTAACTGTGTGAGTAAAAGTTTTTTCATACAAAAA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-163 Predicted to enable metal ion binding activity.

Ensembl:

ensembl_id ENSDART00000141791

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00061542 lncRNA downstream 3585 38105452 ~ 38106799 (-) True XLOC_031262
TCONS_00061541 lncRNA downstream 215493 37890777 ~ 37894891 (-) False XLOC_031255
TCONS_00062049 lncRNA downstream 398534 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00061540 lncRNA downstream 506649 37592276 ~ 37603735 (-) True XLOC_031250
TCONS_00062048 lncRNA downstream 627364 37480447 ~ 37483020 (-) True XLOC_031249
TCONS_00062050 lncRNA upstream 127918 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00060719 lncRNA upstream 127918 38250044 ~ 38255744 (-) True XLOC_031269
TCONS_00062051 lncRNA upstream 492742 38614868 ~ 38633719 (-) True XLOC_031276
TCONS_00062052 lncRNA upstream 498831 38620957 ~ 38622971 (-) True XLOC_031277
TCONS_00062053 lncRNA upstream 650221 38772347 ~ 38773486 (-) False XLOC_031282
TCONS_00060708 mRNA downstream 2643 38104901 ~ 38107741 (-) False XLOC_031262
TCONS_00060707 mRNA downstream 16254 38088594 ~ 38094130 (-) True XLOC_031261
TCONS_00060705 mRNA downstream 46319 38060959 ~ 38064065 (-) False XLOC_031260
TCONS_00060706 mRNA downstream 46799 38061113 ~ 38063585 (-) True XLOC_031260
TCONS_00060703 mRNA downstream 112610 37991513 ~ 37997774 (-) True XLOC_031258
TCONS_00060712 mRNA upstream 1507 38123633 ~ 38161033 (-) False XLOC_031264
TCONS_00060713 mRNA upstream 1515 38123641 ~ 38155005 (-) True XLOC_031264
TCONS_00060714 mRNA upstream 45684 38167810 ~ 38170996 (-) True XLOC_031265
TCONS_00060715 mRNA upstream 53914 38176040 ~ 38179220 (-) True XLOC_031266
TCONS_00060716 mRNA upstream 71327 38193453 ~ 38197080 (-) True XLOC_031267
TCONS_00060704 other downstream 72167 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060699 other downstream 146621 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other downstream 150405 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060692 other downstream 215493 37890607 ~ 37894891 (-) False XLOC_031255
TCONS_00060682 other downstream 842185 37267247 ~ 37268199 (-) True XLOC_031247
TCONS_00060729 other upstream 368220 38490346 ~ 38506648 (-) True XLOC_031273
TCONS_00060736 other upstream 575370 38697496 ~ 38705831 (-) True XLOC_031280
TCONS_00060742 other upstream 676078 38798204 ~ 38798318 (-) True XLOC_031285
TCONS_00060743 other upstream 692038 38814164 ~ 38824346 (-) True XLOC_031283
TCONS_00060744 other upstream 770496 38892622 ~ 38892759 (-) True XLOC_031286

Expression Profile

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