Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00060716 |
| length | 783 |
| RNA type | mRNA |
| GC content | 0.45 |
| exon number | 3 |
| gene id | XLOC_031267 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007116.7 |
| NCBI id | CM002889.2 |
| chromosome length | 72500376 |
| location | 38193453 ~ 38197080 (-) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0042981 | regulation of apoptotic process | biological_process |
| GO:0000422 | autophagy of mitochondrion | biological_process |
| GO:0032436 | positive regulation of proteasomal ubiquitin-dependent protein catabolic process | biological_process |
| GO:0016567 | protein ubiquitination | biological_process |
| GO:0006511 | ubiquitin-dependent protein catabolic process | biological_process |
| GO:0000209 | protein polyubiquitination | biological_process |
| GO:0010821 | regulation of mitochondrion organization | biological_process |
| GO:1900407 | regulation of cellular response to oxidative stress | biological_process |
| GO:0001933 | negative regulation of protein phosphorylation | biological_process |
| GO:0005783 | endoplasmic reticulum | cellular_component |
| GO:0005794 | Golgi apparatus | cellular_component |
| GO:0005829 | cytosol | cellular_component |
| GO:0000151 | ubiquitin ligase complex | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| GO:0016740 | transferase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0004842 | ubiquitin-protein transferase activity | molecular_function |
| GO:0031624 | ubiquitin conjugating enzyme binding | molecular_function |
| GO:0061630 | ubiquitin protein ligase activity | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-060526-164 | Predicted to enable ubiquitin conjugating enzyme binding activity and ubiquitin protein ligase activity. Predicted to be involved in several processes, including autophagy of mitochondrion; cellular protein metabolic process; and regulation of cellular protein metabolic process. Predicted to act upstream of or within protein ubiquitination. Predicted to be part of ubiquitin ligase complex. Predicted to be active in Golgi apparatus; cytosol; and endoplasmic reticulum. |
| ensembl_id | ENSDART00000140708 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00061542 | lncRNA | downstream | 86654 | 38105452 ~ 38106799 (-) | True | XLOC_031262 |
| TCONS_00061541 | lncRNA | downstream | 298562 | 37890777 ~ 37894891 (-) | False | XLOC_031255 |
| TCONS_00062049 | lncRNA | downstream | 481603 | 37708702 ~ 37711850 (-) | True | XLOC_031251 |
| TCONS_00061540 | lncRNA | downstream | 589718 | 37592276 ~ 37603735 (-) | True | XLOC_031250 |
| TCONS_00062048 | lncRNA | downstream | 710433 | 37480447 ~ 37483020 (-) | True | XLOC_031249 |
| TCONS_00062050 | lncRNA | upstream | 52964 | 38250044 ~ 38255700 (-) | False | XLOC_031269 |
| TCONS_00060719 | lncRNA | upstream | 52964 | 38250044 ~ 38255744 (-) | True | XLOC_031269 |
| TCONS_00062051 | lncRNA | upstream | 417788 | 38614868 ~ 38633719 (-) | True | XLOC_031276 |
| TCONS_00062052 | lncRNA | upstream | 423877 | 38620957 ~ 38622971 (-) | True | XLOC_031277 |
| TCONS_00062053 | lncRNA | upstream | 575267 | 38772347 ~ 38773486 (-) | False | XLOC_031282 |
| TCONS_00060715 | mRNA | downstream | 14233 | 38176040 ~ 38179220 (-) | True | XLOC_031266 |
| TCONS_00060714 | mRNA | downstream | 22457 | 38167810 ~ 38170996 (-) | True | XLOC_031265 |
| TCONS_00060712 | mRNA | downstream | 32420 | 38123633 ~ 38161033 (-) | False | XLOC_031264 |
| TCONS_00060713 | mRNA | downstream | 38448 | 38123641 ~ 38155005 (-) | True | XLOC_031264 |
| TCONS_00060711 | mRNA | downstream | 71327 | 38110384 ~ 38122126 (-) | False | XLOC_031263 |
| TCONS_00060717 | mRNA | upstream | 18844 | 38215924 ~ 38248462 (-) | False | XLOC_031268 |
| TCONS_00060718 | mRNA | upstream | 20300 | 38217380 ~ 38248347 (-) | True | XLOC_031268 |
| TCONS_00060720 | mRNA | upstream | 104826 | 38301906 ~ 38384755 (-) | False | XLOC_031270 |
| TCONS_00060721 | mRNA | upstream | 108493 | 38305573 ~ 38384289 (-) | False | XLOC_031270 |
| TCONS_00060722 | mRNA | upstream | 132516 | 38329596 ~ 38342992 (-) | False | XLOC_031270 |
| TCONS_00060704 | other | downstream | 155236 | 38035337 ~ 38038217 (-) | True | XLOC_031259 |
| TCONS_00060699 | other | downstream | 229690 | 37948854 ~ 37963763 (-) | False | XLOC_031257 |
| TCONS_00060700 | other | downstream | 233474 | 37953336 ~ 37959979 (-) | True | XLOC_031257 |
| TCONS_00060692 | other | downstream | 298562 | 37890607 ~ 37894891 (-) | False | XLOC_031255 |
| TCONS_00060682 | other | downstream | 925254 | 37267247 ~ 37268199 (-) | True | XLOC_031247 |
| TCONS_00060729 | other | upstream | 293266 | 38490346 ~ 38506648 (-) | True | XLOC_031273 |
| TCONS_00060736 | other | upstream | 500416 | 38697496 ~ 38705831 (-) | True | XLOC_031280 |
| TCONS_00060742 | other | upstream | 601124 | 38798204 ~ 38798318 (-) | True | XLOC_031285 |
| TCONS_00060743 | other | upstream | 617084 | 38814164 ~ 38824346 (-) | True | XLOC_031283 |
| TCONS_00060744 | other | upstream | 695542 | 38892622 ~ 38892759 (-) | True | XLOC_031286 |
