RNA id: TCONS_00060721


Basic Information

Item Value
RNA id TCONS_00060721
length 4201
RNA type mRNA
GC content 0.51
exon number 31
gene id XLOC_031270
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38301906 ~ 38384755 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTCAGAAAACGCACCTACGCGGAGTCTGGATGACATCGACCTGGCCGCCCTGCGGGACCCAGCAGGGATCTTCGAGTTGGTGGAGGTCGTGGGCAACGGCACCTATGGACAAGTTTACAAGGGTCGTCATGTTAAGACAGGTCAGCTGGCAGCCATAAAAGTCATGGATGTgactgaggaagaagaggaggagattAAAGCGGAGATTAACATGCTGAAGAAGTACAGTCACCATAGAAATATCGCCACCTACTATGGAGCCTTTGTGAAGAAGAGTCCTCCTGGACACGATGACCAGCTCTGGTTGGTGATGGAGTTTTGTGGTGCCGGCTCAGTAACAGACTTGGTGAAGAACACAAAAGGCAACTCTTTAAAAGAAGACTGGATCGCCTATATCTGCAGAGAGATCCTTAGGGGTCTGTCTCACCTCCATGCTCATAAAGTCATCCACCGAGACATCAAGGGACAGAATGTGCTGCTTACAGAGAACGCAGAGGTTAAACTGGTGGATTTTGGGGTGAGCGCACAGTTGGATCGTACTGTCGGCAGAAGAAACACTTTCATTGGCACTCCATACTGGATGGCCCCAGAAGTCATTGCCTGTGATGAAAATCCCGACTCCACCTATGATTACAGGAGTGATATCTGGTCTCTGGGAATCACTGCTATAGAAATGGCTGAAGGAGCACCTCCGTTGTGTGACATGCATCCCATGCGAGCTTTGTTCCTTATCCCACGGAACCCTCCTCCCAAACTGAAGTCCAAGAAATGGTCTAAGAAGTTCATTGACTTCATCGAGGGCTGTCTGGTAAAGTCATATCCGAATCGTCCGTCCACTGAACAGCTCCTGAAACACTCATTCATCAGAGATCAGCCCACTGAAAGACAAGTCCGCATCCAGCTCAAAGATCACATCGACAGAACACGCAAGAAACGTGGCGAAAAAGAGGAGACAGAGTACGAGTACAGCGGCAGTGATGAAGAGGATGAGAACAGAGGAGATGAGAGAGAATCCAGCTCTATTTTGAATGTTCCTGGTGAGTCGACGTTGCGGAGGGATTTCCTGCGGCTGCAGCAAGAAAATAAAGAGCGTTCAGAGGCCTTAAAGAGACAGCAGGCGCAGCTCGCCGCTCAGCGCAGAGACCCTGAGGAGCATAAACGCCAGCTGCTGCACGACCGGCAGAAGCGCATAGAGGAGCAGAAAGAGCAGAGGCGACGCTTAGAGGAGcaACAGAGGAAGGAGAGAGAGATGGTGCGGCAACAACAGGATAAAGCTCCTCACCGGAGACTCGATGACATGAGACGAGAGGAGGACAGGAGGTTGGCAGAGAGAGAGCAGGAGTATAAGCGTAAACAGCTGGAGGAGCAGAGACAGTCAGAGAGGCTTCAGAGGCAGTTACAGCAGGAACATGCGTATCTGGTCTCTCtacagcaacagcagcagcagcaagacAAGAAACCACAGATGTATCACTACAGCAAGAACCTAGAGAACAACAAACCAGCCTGGGCTAGAGAGGTCGAGGAGCGCAGTAAGCTGAACAGACAGGGCTCTCCCAAAATCTGCACCACGGTCTCTGACACTAATATTCAATCCCGCTCTGagtcaatcaaccaatcaggAGCTGCGCAGACGCCGCCCATGCAGAGACCTGTGGAGCCGCAGGGTGGACAGGGAAAGATGGCCCATCTAGTGCCGTTAAAACCATACGCCGCTCCAGTCCCTCGCTCTCAGTCTCTTTGTGATCAGCCCACTAAGACCATGTCCGCCTTCCCCACCCAGGACCCCTCACCCACACCCACACCTCGTCCTCTACACTCCAGAGAACTAGTCCGTCAAAACTCTGACCCCACCTCAGAGACTCCTGCCCCTCAGTCCCGGCCAATGAGAGACGACCGCGGACCCTGGATCCGTCTTCCTGAGATTGAACAACCTCCTAAAATTCCTCAGAGAACAGCCTCTATAGCCACTGCACTGAACACAAATCTCTCCTCTGGTATCAGACACCCAGTCCGAGCAAGTAATCCAGATCTGAGTCGCAATGAGCGCTGGGAGAGAGGAGACAGCATGAGCATCATGTCCAACCTGCCACAGACCGGCTCTCTGGAGAGACACCGCATACTCAGCTCATCTAAGATGGATTCCTCTCCAACCCTCTCTCATGATGGCCGACACAAACCAGGAGAATCCCGAACCTCATCTAGACCCAGCAGACCAGCGAGCTATAAGAGAGCAATAGGAGAGGATCATGGTCTGTACTCTAAGGAGCGAGCAGAGGAGCAGCCGCGGCCCCCTGTGAAGGCCAACGACTACTCCTCTTCCTCAGAGAGCAGTGAAAGCAGCGAAGAGAGTGAAAGTGGAGAAGGAGCAGAGGAGGAAAGCCCTACTGACCGCCCCCGTGATGCAGATTCTGACTCTGTGAACACTATGGTTGTCCATGAAGAGGAGGAAGGtgaaggaggagaagaagaaCGTGCTGGAGGATATGGAGACCAAACCATGCTTGTGCAGAGGACTCCAGAGAAGCGCAGTCATAATGGATACACCAACCTGCCTGATGTGGTTCAGCCTTCTCACTCTCCCACAGACTCGGCCTCCCACTCCTCCCCCGGGAAAGACTCTACTTATGATTATCAGTCCAGGGGATTGGTCAAGGCCTCTGGAAAATCCTCTTTTACTACCTTTGTGGACCTTGGAATGTACCAGCCATCAGGGGGTAGTGGAGATAACATTTCTGTTGGAGGTCTGGGCTCTCGTTTTGAGCAGCTAAAGCTGGAGGTGAGGAAGGGCTCCATGGTCAATGTCAATCCCACAAACACACGTCCGGTCAGTGACACTCCTGAAATCCGCAAATACAAGAAGAGATTTAACTCTGAGATCCTCTGCGCTGCTCTCTGGGGTGTGAATCTGCTGGTCGggacagagaatggtctgaagcTGCTGGACAGAAGCGGTCAGGGTAAAGTGTATCCACTGATCAACTCGCGCAGATTTCAGCAGATGGATGTCCTGGAGGGACTGAACCTCCTCATCACTATATCAGGCAAGAAGAATAAGGTACGCGTGTATTATCTGGCCTGGCTGAGGAATAAGATCCTCCATAATGACCCAGAGGTGGAGAAGAAACAGGGCTGGACCACTGTAGGGGAAATGGAGGGCTGTGTGCACTATAAAGTGGTGAAATATGAAAGGATTAAGTTTCTGGTTATCGCTCTGAAGAATGCAGTGGAGGTTTACGCCTGGGCTCCAAAACCTTACCACAAGTTCATGGCCTTCAAGGTACTGACGCAAGCTTTGTACCTGCCGCACAGACCTGTGTTGGTTGACCTCACAGTGGAAGAGGGTCAGAGGTTAAAGGTCATCTATGGCTCCTTGGCTGGCTTCCATGCCATTGATGTTGACTCTGGAAACAACTACGACATCTACATTCCTGTACATATCACTCCTCACGCCATCGTGTTCCTGCCCAACTCAGATGGGATGGAGATGCTGTTGTGTTATGAGGACGAAGGTGTTTATGTCAACACGTACGGACGCATCATTAAAGATGTGGTGCTGCAGTGGGGAGAAATGCCCACATCAGTAGCCCACATTTGCTCTAATCAGATTATGGGTTGGGGAGAGAAAGCCATTGAGATCCGTTCTGTTGAGACGGGACACCTGGATGGAGTCTTCATGCACAAGAGAGCCCAGAGGCTTAAGTTCCTGTGTGAACGGAACGACAAGgTGTTTTTCGCGTCAGTGCGTTCCGGTGGCAGCAGCCAAGTTTACTTCATGACCCTCAACAGAAACTGCATTATGAACTGGTGAAAGAACATGGGTTCTGCTGTgtacacacattcaaacactgaagagataAAGTCCTCGCACACTACAACACCCTCAAACACTTTGTAAATACACAtttactctcacacacactcacactttccTGCACAAACCTACAGACACATCTTCCTGAAGACACTCCTCCACCATTCTCCTGTGATCTCTGAGCCAACTGAGCCCTGCTGACCTCAGTTCATCCAGTTCCACACGGTTAGCTTTCAGTTCACCGGGGCCAACGTTCCTCCGATGCTTTTAGGACTAGACAAAAGGCTAACTGTACATACATTGTACCAGAGATGCGTGTAAACAAAACGATGCGTGTAAACAAAACTATGAGAATCGTTCGGTTGTTGCGCGTTTGTGACGCAGC

Function

GO:

id name namespace
GO:0031532 actin cytoskeleton reorganization biological_process
GO:0048812 neuron projection morphogenesis biological_process
GO:0023014 signal transduction by protein phosphorylation biological_process
GO:0032147 activation of protein kinase activity biological_process
GO:0000165 MAPK cascade biological_process
GO:0006468 protein phosphorylation biological_process
GO:0031098 stress-activated protein kinase signaling cascade biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060526-45 Predicted to enable protein serine/threonine kinase activity. Predicted to be involved in several processes, including MAPK cascade; actin cytoskeleton reorganization; and activation of protein kinase activity. Predicted to be active in cytoplasm. Orthologous to human MINK1 (misshapen like kinase 1).

Ensembl:

ensembl_id ENSDART00000135260

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060719 lncRNA downstream 49829 38250044 ~ 38255744 (-) True XLOC_031269
TCONS_00062050 lncRNA downstream 49873 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00061542 lncRNA downstream 198774 38105452 ~ 38106799 (-) True XLOC_031262
TCONS_00061541 lncRNA downstream 410682 37890777 ~ 37894891 (-) False XLOC_031255
TCONS_00062049 lncRNA downstream 593723 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00062051 lncRNA upstream 230579 38614868 ~ 38633719 (-) True XLOC_031276
TCONS_00062052 lncRNA upstream 236668 38620957 ~ 38622971 (-) True XLOC_031277
TCONS_00062053 lncRNA upstream 388058 38772347 ~ 38773486 (-) False XLOC_031282
TCONS_00060739 lncRNA upstream 388058 38772347 ~ 38777792 (-) True XLOC_031282
TCONS_00062054 lncRNA upstream 406443 38790732 ~ 38791845 (-) True XLOC_031284
TCONS_00060717 mRNA downstream 57111 38215924 ~ 38248462 (-) False XLOC_031268
TCONS_00060718 mRNA downstream 57226 38217380 ~ 38248347 (-) True XLOC_031268
TCONS_00060716 mRNA downstream 108493 38193453 ~ 38197080 (-) True XLOC_031267
TCONS_00060715 mRNA downstream 126353 38176040 ~ 38179220 (-) True XLOC_031266
TCONS_00060714 mRNA downstream 134577 38167810 ~ 38170996 (-) True XLOC_031265
TCONS_00060724 mRNA upstream 4154 38388443 ~ 38438613 (-) False XLOC_031271
TCONS_00060725 mRNA upstream 6619 38390908 ~ 38428217 (-) False XLOC_031271
TCONS_00060726 mRNA upstream 6619 38390908 ~ 38429057 (-) True XLOC_031271
TCONS_00060727 mRNA upstream 55810 38440099 ~ 38451082 (-) True XLOC_031272
TCONS_00060728 mRNA upstream 91242 38475531 ~ 38506981 (-) False XLOC_031273
TCONS_00060704 other downstream 267356 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060699 other downstream 341810 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other downstream 345594 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060692 other downstream 410682 37890607 ~ 37894891 (-) False XLOC_031255
TCONS_00060682 other downstream 1037374 37267247 ~ 37268199 (-) True XLOC_031247
TCONS_00060729 other upstream 106057 38490346 ~ 38506648 (-) True XLOC_031273
TCONS_00060736 other upstream 313207 38697496 ~ 38705831 (-) True XLOC_031280
TCONS_00060742 other upstream 413915 38798204 ~ 38798318 (-) True XLOC_031285
TCONS_00060743 other upstream 429875 38814164 ~ 38824346 (-) True XLOC_031283
TCONS_00060744 other upstream 508333 38892622 ~ 38892759 (-) True XLOC_031286

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) AMCG00014500 True 7313 mRNA 0.46 30 CM030128.1 15823276 ~ 15870879 (+)