RNA id: TCONS_00060729


Basic Information

Item Value
RNA id TCONS_00060729
length 429
RNA type processed_transcript
GC content 0.46
exon number 3
gene id XLOC_031273
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38475531 ~ 38506981 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGGCTGGAAGGAGTTCTTCTGGAACCCGAGGACCCGCGAGTTCTGCGGGAGGACCGCGAGCAGTTGGGgtctGATTCTGCTGTTTTATCTGGCATTCTACATATTCCTGGCTGGATTGTTTACTCTCACCATGTACGTAATGCTGCAGACCCTCGATGACCACAGACCAACATACCAGGACAGACTTTCAActccagGGATGATGATCAGACCTAAAGGAGAGCAGCTGGAGATTGCTTATACCACCGAGTACACAGAGACCTGGGAAAGATACGTGCAGGCTCTCAATAACTTCCTCTCACGTGCGTTTATTTAACAACCCTAATGCTGCATGTATTGCACAGTAAATATAGACATTAGGCATTTGATTAAAGCTACGGTATCTAACTTCTGAAAATCTAGTGGTTAATAAATGAAGAGCTTACAGGC

Function

GO:

id name namespace
GO:0006883 cellular sodium ion homeostasis biological_process
GO:0007507 heart development biological_process
GO:0042472 inner ear morphogenesis biological_process
GO:0036376 sodium ion export across plasma membrane biological_process
GO:0048840 otolith development biological_process
GO:0030007 cellular potassium ion homeostasis biological_process
GO:0048923 posterior lateral line neuromast hair cell differentiation biological_process
GO:0006811 ion transport biological_process
GO:0006813 potassium ion transport biological_process
GO:0006814 sodium ion transport biological_process
GO:1990573 potassium ion import across plasma membrane biological_process
GO:0001964 startle response biological_process
GO:0005890 sodium cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005391 sodium molecular_function
GO:0001671 ATPase activator activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-010718-1 Predicted to enable ATPase activator activity. Acts upstream of or within heart development; sensory organ development; and startle response. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of sodium:potassium-exchanging ATPase complex. Is expressed in several structures, including fin; heart; otic epithelium; pronephric duct; and sensory system. Orthologous to human ATP1B2 (ATPase Na+/K+ transporting subunit beta 2).

Ensembl:

ensembl_id ENSDART00000141195

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060719 lncRNA downstream 234602 38250044 ~ 38255744 (-) True XLOC_031269
TCONS_00062050 lncRNA downstream 234646 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00061542 lncRNA downstream 383547 38105452 ~ 38106799 (-) True XLOC_031262
TCONS_00061541 lncRNA downstream 595455 37890777 ~ 37894891 (-) False XLOC_031255
TCONS_00062049 lncRNA downstream 778496 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00062051 lncRNA upstream 108220 38614868 ~ 38633719 (-) True XLOC_031276
TCONS_00062052 lncRNA upstream 114309 38620957 ~ 38622971 (-) True XLOC_031277
TCONS_00062053 lncRNA upstream 265699 38772347 ~ 38773486 (-) False XLOC_031282
TCONS_00060739 lncRNA upstream 265699 38772347 ~ 38777792 (-) True XLOC_031282
TCONS_00062054 lncRNA upstream 284084 38790732 ~ 38791845 (-) True XLOC_031284
TCONS_00060727 mRNA downstream 39264 38440099 ~ 38451082 (-) True XLOC_031272
TCONS_00060724 mRNA downstream 51733 38388443 ~ 38438613 (-) False XLOC_031271
TCONS_00060726 mRNA downstream 61289 38390908 ~ 38429057 (-) True XLOC_031271
TCONS_00060725 mRNA downstream 62129 38390908 ~ 38428217 (-) False XLOC_031271
TCONS_00060720 mRNA downstream 105591 38301906 ~ 38384755 (-) False XLOC_031270
TCONS_00060730 mRNA upstream 10838 38517486 ~ 38533861 (-) True XLOC_031274
TCONS_00060731 mRNA upstream 98229 38604877 ~ 38611407 (-) True XLOC_031275
TCONS_00060732 mRNA upstream 135285 38641933 ~ 38643188 (-) False XLOC_031278
TCONS_00060733 mRNA upstream 135303 38641951 ~ 38645353 (-) False XLOC_031278
TCONS_00060734 mRNA upstream 137737 38644385 ~ 38645292 (-) True XLOC_031278
TCONS_00060704 other downstream 452129 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060699 other downstream 526583 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other downstream 530367 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060692 other downstream 595455 37890607 ~ 37894891 (-) False XLOC_031255
TCONS_00060682 other downstream 1222147 37267247 ~ 37268199 (-) True XLOC_031247
TCONS_00060736 other upstream 190848 38697496 ~ 38705831 (-) True XLOC_031280
TCONS_00060742 other upstream 291556 38798204 ~ 38798318 (-) True XLOC_031285
TCONS_00060743 other upstream 307516 38814164 ~ 38824346 (-) True XLOC_031283
TCONS_00060744 other upstream 385974 38892622 ~ 38892759 (-) True XLOC_031286
TCONS_00060745 other upstream 523163 39029811 ~ 39029925 (-) True XLOC_031287

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000039_06313617_06317466.mRNA True 2237 mRNA 0.39 7 CI01000039 6313433 ~ 6318745 (+)