RNA id: TCONS_00062051


Basic Information

Item Value
RNA id TCONS_00062051
length 1172
lncRNA type read_through
GC content 0.30
exon number 2
gene id XLOC_031276
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38614868 ~ 38633719 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTGAACTCATAATCTTTTATTAGAGTCTTTACTAAAAGATTCTTGCCAGACAAGATCTTTTGGTATATAAAGTCCTTTTCTTTTTTGACCCATACACAGTATAAAACAAACATACTGTAACAAATCAAAACTGTAAAAGGCTAAGCAAAGCAATTAGCAATAAAGCACGAGTTACTCAAAAggcattttgtcatcatttatagTAACATTTAAACATACAATAGTTAGAATCAATAATATTCACTCACCATAACTTGCATACTGTAATTACTAAAAGTAATCTAGTTTGGTGTTTTTAGAAATGAAATgaattttacaaatgtaaatatctaaataaagaCTTGGACAAATGCTGAAGACTGTAGTCATACTGTAAACAACAGTGTACAGCATATGCAGTATctatttttgcaaacaaaatggTTACATGGCACATGCACATACTAAAAAGTGTTTGTGAACTTCATGTATATTGTAATATATCACAAAAACCTTCAGTTTAATTCTCTTCATGCAGTTTATTATATGAAGCTTAGTAACAATTACTACTAAAATTCACAACTGCTGAGATTTTAGCTGCAAAGGGCtgttaaaatgctgcagtaaaaatcaATTTTGGATTTTGGAGCGAATTCAGAATTCACTGAATTCATTTATAGTTTTTCTCATCAGTTATGTAAAGTGTTTTATGCTACATGTaattttgtagaataaaatgttgtGTTTTACCATGATGGTTAGTATAGCCTGAAAGACACCTAtgcttatttagcttttttttctaaGCTGTTTGTAATTAGCTTTGGTTTATCATTTGACTTTTATATATTAGTGTTTCAATAACTTATGAGTTAGTGATTTATGGTGGTTTGTTGTTAAAGTTAAATCTGTAAAAGCTGAAAGTATGCTGCTATAATTATGCTCTTCTGGCAtccacagctgtcttttttttttcataaaaagtcattattttttagtgtaatttctttattcattttgatAGCTAGTATCTTAAAGAATAATATAGGATTAATCCAGCAATAGTGCCAAAAATGACAAAACCGATAAAAGCAAATGCAACACGATTTTTTCTGAAACAATCCACAATTCCATTAGATCCATCTTGTTGTCATCCTGGGTTTAAGGGAATTGCTTCTTCATCCTGATATGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060719 lncRNA downstream 359124 38250044 ~ 38255744 (-) True XLOC_031269
TCONS_00062050 lncRNA downstream 359168 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00061542 lncRNA downstream 508069 38105452 ~ 38106799 (-) True XLOC_031262
TCONS_00061541 lncRNA downstream 719977 37890777 ~ 37894891 (-) False XLOC_031255
TCONS_00062049 lncRNA downstream 903018 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00062053 lncRNA upstream 138628 38772347 ~ 38773486 (-) False XLOC_031282
TCONS_00060739 lncRNA upstream 138628 38772347 ~ 38777792 (-) True XLOC_031282
TCONS_00062054 lncRNA upstream 157013 38790732 ~ 38791845 (-) True XLOC_031284
TCONS_00062055 lncRNA upstream 408335 39042054 ~ 39045354 (-) True XLOC_031288
TCONS_00062056 lncRNA upstream 1246939 39880658 ~ 39881073 (-) True XLOC_031294
TCONS_00060731 mRNA downstream 3461 38604877 ~ 38611407 (-) True XLOC_031275
TCONS_00060730 mRNA downstream 81007 38517486 ~ 38533861 (-) True XLOC_031274
TCONS_00060728 mRNA downstream 107887 38475531 ~ 38506981 (-) False XLOC_031273
TCONS_00060727 mRNA downstream 163786 38440099 ~ 38451082 (-) True XLOC_031272
TCONS_00060724 mRNA downstream 176255 38388443 ~ 38438613 (-) False XLOC_031271
TCONS_00060732 mRNA upstream 8214 38641933 ~ 38643188 (-) False XLOC_031278
TCONS_00060733 mRNA upstream 8232 38641951 ~ 38645353 (-) False XLOC_031278
TCONS_00060734 mRNA upstream 10666 38644385 ~ 38645292 (-) True XLOC_031278
TCONS_00060735 mRNA upstream 52327 38686046 ~ 38711506 (-) True XLOC_031279
TCONS_00060737 mRNA upstream 99142 38732861 ~ 38762414 (-) True XLOC_031281
TCONS_00060729 other downstream 108220 38490346 ~ 38506648 (-) True XLOC_031273
TCONS_00060704 other downstream 576651 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060699 other downstream 651105 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other downstream 654889 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060692 other downstream 719977 37890607 ~ 37894891 (-) False XLOC_031255
TCONS_00060736 other upstream 63777 38697496 ~ 38705831 (-) True XLOC_031280
TCONS_00060742 other upstream 164485 38798204 ~ 38798318 (-) True XLOC_031285
TCONS_00060743 other upstream 180445 38814164 ~ 38824346 (-) True XLOC_031283
TCONS_00060744 other upstream 258903 38892622 ~ 38892759 (-) True XLOC_031286
TCONS_00060745 other upstream 396092 39029811 ~ 39029925 (-) True XLOC_031287