RNA id: TCONS_00062052


Basic Information

Item Value
RNA id TCONS_00062052
length 2015
lncRNA type intronic
GC content 0.37
exon number 1
gene id XLOC_031277
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38620957 ~ 38622971 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGCAATCGGTTTCGGGTGGGATCCGACTCTTACAAATCACTTAAGTGAGCCGATTCCTAGAACCGAACCGAGTCACTCGACTCAAACAATGCCGACTCGCTTCACTAGACAACGTGGAGATGTCGTGGTCTCATCCAAACGGATTTATCGGTAAGTGTTGAAATGTCCAACTTTGTTAATTATATAATCGTTATATATTTCTGTATAGCATGTAATTCACCAAGTAACTTTAGCTTCTTTTGTCACGCTGTTTAGCGCGCCTATTAAACGAAGTTACCAATTcactatattactatattataccAAAACACTATATCACTATAATTAtagtcacatcagcagcagcacgtgcGCTATGAGTGAAAAGATTAGAACGCGTGTTTGTAACGTTAATGCTAATTTCGTGGTATTAGAGAGtgtttgagtttttaaaaagGTAATCTTCTGTTAACTTACTGTTAACTGTGTTCTGTTTCAGCACAGCATTGAGTTAAAGTGACCACAGAATAAAGTAAGCAAGGTAAGAACTGGCCTTCACTTCATTATAAACCTCATtatcaaaccaaaacaaaaatgatattgTCTAACACTATTTACTAATTACAACTTTTTGTATAGTGTCAGAGGCAGAggagacacatcaaccagcaagtgtgtaactTATCAGgaaaatgactgactgaatggatGACTGTCTAGGTTGCAAGCTGGACATACATGTTACAGTTAAGTATTTCagctacaacatactgttaaatCACAGTAACCATCTTGCCATTAAATGTAACTTCACAGTAAAGTATATTTAATTCTACAAGAGAATACGGTGAAATCACAGAAATGGGCCTTACTATCTACCTTGACGTCACATAtggctgtaatttcactgtaagtAAGTGTAAAACAAATCACAGTGGCTTACTGGGAAAGTAATACAATTATTAGTCAGTAATTTACTGTTAATTAGGggtcaaatattttacaatgtatcAATAAAACTCGTAAACATTTTTCTGTCATTCTGTTTTTTAAGGTGAGCGCTGAATTTAAGAGAGAAGCCACTGTGCACCGTGGATCTTCACAGCTGCTGAGGAGCTCTTGGAGTAAGACAGAGATCTGAGACTAAAGGTAGAGTTTATGATGTTTATCATGTTTACAGTTTCTGACTGTATGTCATAACATTATAACAGATTATTaacatattttctcttttattaatttttttttcttactgttgCTCAATGGAATTGGACAATGAAGAATCGACAAGAACTGAACGGCTTGTGAGGGCAGTAAAGTTGACCTGAGCAGGGGCCTTCTACAGGGGACCGCCTAAAGATActggcatcatcatcatcatcattgaagGTGTTAAAGTTCTTATAGACCTCATCTTTACCAGACTCAGGCAAACTCTGCTTTCACTCTGCCCAAAGCCCCAGCTGGACTGTTTTGGTGGCCCAGGGTATCtgatcaggccccggaagtgactgtGGAAACTTGACTGGCCCTGGCTCGCATTGGCACGCTAACTTACGTTGCGAGAGTGAAAACACGGCTCTTGACTACATTCCCAGAGCTTGTGTCCACCTGGGTTTGACCTATGCATTTTAACTGTGacaaagaaaaatgtttttacaagTGACTGTCTGGTTAACACTGGAAGATATTAGAGGGTAGTATACCCATAAACTGCTGTGTCCTCTTTGCTTCAATGAATCTGCATTATTCTGGCAAATAATACCTTTCATGCATTAAATCAGATAAATTTCACTCTAAgactattgttttaaataatattgtttaatgtcCAGTTGTTTGaaactgctgtttaaaaaaagatgatcAAAGTCCTTGTTAAGATGATCAGTTTGTTTATATGTACatgttttattgtgtattatatGACGTATTGTCTATTATAAGATTGTTGTTACTCTGTATTGTGGCTCCACACTGCTGAACAGGCTCCACTAATTTGagctaaattgaattaaattttactCAATCCATA

Function

GO:

id name namespace
GO:0048729 tissue morphogenesis biological_process
GO:0042692 muscle cell differentiation biological_process
GO:0048731 system development biological_process
GO:0019222 regulation of metabolic process biological_process
GO:0048741 skeletal muscle fiber development biological_process
GO:0048747 muscle fiber development biological_process
GO:0021546 rhombomere development biological_process
GO:0001732 formation of cytoplasmic translation initiation complex biological_process
GO:0002009 morphogenesis of an epithelium biological_process
GO:0006351 transcription, DNA-templated biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007519 skeletal muscle tissue development biological_process
GO:0048513 animal organ development biological_process
GO:1990399 epithelium regeneration biological_process
GO:0071599 otic vesicle development biological_process
GO:0021593 rhombomere morphogenesis biological_process
GO:0021594 rhombomere formation biological_process
GO:0035295 tube development biological_process
GO:0009058 biosynthetic process biological_process
GO:0009059 macromolecule biosynthetic process biological_process
GO:1901576 organic substance biosynthetic process biological_process
GO:0009887 animal organ morphogenesis biological_process
GO:0007275 multicellular organism development biological_process
GO:0009888 tissue development biological_process
GO:0009889 regulation of biosynthetic process biological_process
GO:0097659 nucleic acid-templated transcription biological_process
GO:0031323 regulation of cellular metabolic process biological_process
GO:0060429 epithelium development biological_process
GO:0031326 regulation of cellular biosynthetic process biological_process
GO:0048562 embryonic organ morphogenesis biological_process
GO:0014904 myotube cell development biological_process
GO:0048568 embryonic organ development biological_process
GO:0009653 anatomical structure morphogenesis biological_process
GO:0048856 anatomical structure development biological_process
GO:0048589 developmental growth biological_process
GO:1903506 regulation of nucleic acid-templated transcription biological_process
GO:0048596 embryonic camera-type eye morphogenesis biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0010467 gene expression biological_process
GO:0031076 embryonic camera-type eye development biological_process
GO:0010468 regulation of gene expression biological_process
GO:0044249 cellular biosynthetic process biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0044271 cellular nitrogen compound biosynthetic process biological_process
GO:0071696 ectodermal placode development biological_process
GO:0040007 growth biological_process
GO:0070654 sensory epithelium regeneration biological_process
GO:0048646 anatomical structure formation involved in morphogenesis biological_process
GO:0003002 regionalization biological_process
GO:0007389 pattern specification process biological_process
GO:0048048 embryonic eye morphogenesis biological_process
GO:0061061 muscle structure development biological_process
GO:0032501 multicellular organismal process biological_process
GO:2001141 regulation of RNA biosynthetic process biological_process
GO:0032502 developmental process biological_process
GO:0060537 muscle tissue development biological_process
GO:0002183 cytoplasmic translational initiation biological_process
GO:0032774 RNA biosynthetic process biological_process
GO:0060538 skeletal muscle organ development biological_process
GO:0007417 central nervous system development biological_process
GO:0010556 regulation of macromolecule biosynthetic process biological_process
GO:0034645 cellular macromolecule biosynthetic process biological_process
GO:0007420 brain development biological_process
GO:0014706 striated muscle tissue development biological_process
GO:2000112 regulation of cellular macromolecule biosynthetic process biological_process
GO:0060562 epithelial tube morphogenesis biological_process
GO:0060322 head development biological_process
GO:0009790 embryo development biological_process
GO:0005852 eukaryotic translation initiation factor 3 complex cellular_component
GO:0033290 eukaryotic 48S preinitiation complex cellular_component
GO:0016282 eukaryotic 43S preinitiation complex cellular_component
GO:0070993 translation preinitiation complex cellular_component
GO:0005730 nucleolus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0097159 organic cyclic compound binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000976 transcription regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:1901363 heterocyclic compound binding molecular_function
GO:0140110 transcription regulator activity molecular_function
GO:0001067 regulatory region nucleic acid binding molecular_function
GO:1990837 sequence-specific double-stranded DNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00060719 lncRNA downstream 365213 38250044 ~ 38255744 (-) True XLOC_031269
TCONS_00062050 lncRNA downstream 365257 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00061542 lncRNA downstream 514158 38105452 ~ 38106799 (-) True XLOC_031262
TCONS_00061541 lncRNA downstream 726066 37890777 ~ 37894891 (-) False XLOC_031255
TCONS_00062049 lncRNA downstream 909107 37708702 ~ 37711850 (-) True XLOC_031251
TCONS_00062053 lncRNA upstream 149376 38772347 ~ 38773486 (-) False XLOC_031282
TCONS_00060739 lncRNA upstream 149376 38772347 ~ 38777792 (-) True XLOC_031282
TCONS_00062054 lncRNA upstream 167761 38790732 ~ 38791845 (-) True XLOC_031284
TCONS_00062055 lncRNA upstream 419083 39042054 ~ 39045354 (-) True XLOC_031288
TCONS_00062056 lncRNA upstream 1257687 39880658 ~ 39881073 (-) True XLOC_031294
TCONS_00060731 mRNA downstream 9550 38604877 ~ 38611407 (-) True XLOC_031275
TCONS_00060730 mRNA downstream 87096 38517486 ~ 38533861 (-) True XLOC_031274
TCONS_00060728 mRNA downstream 113976 38475531 ~ 38506981 (-) False XLOC_031273
TCONS_00060727 mRNA downstream 169875 38440099 ~ 38451082 (-) True XLOC_031272
TCONS_00060726 mRNA downstream 191900 38390908 ~ 38429057 (-) True XLOC_031271
TCONS_00060732 mRNA upstream 18962 38641933 ~ 38643188 (-) False XLOC_031278
TCONS_00060733 mRNA upstream 18980 38641951 ~ 38645353 (-) False XLOC_031278
TCONS_00060734 mRNA upstream 21414 38644385 ~ 38645292 (-) True XLOC_031278
TCONS_00060735 mRNA upstream 63075 38686046 ~ 38711506 (-) True XLOC_031279
TCONS_00060737 mRNA upstream 109890 38732861 ~ 38762414 (-) True XLOC_031281
TCONS_00060729 other downstream 114309 38490346 ~ 38506648 (-) True XLOC_031273
TCONS_00060704 other downstream 582740 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060699 other downstream 657194 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other downstream 660978 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060692 other downstream 726066 37890607 ~ 37894891 (-) False XLOC_031255
TCONS_00060736 other upstream 74525 38697496 ~ 38705831 (-) True XLOC_031280
TCONS_00060742 other upstream 175233 38798204 ~ 38798318 (-) True XLOC_031285
TCONS_00060743 other upstream 191193 38814164 ~ 38824346 (-) True XLOC_031283
TCONS_00060744 other upstream 269651 38892622 ~ 38892759 (-) True XLOC_031286
TCONS_00060745 other upstream 406840 39029811 ~ 39029925 (-) True XLOC_031287

Expression Profile

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