RNA id: TCONS_00062053


Basic Information

Item Value
RNA id TCONS_00062053
length 1140
lncRNA type sense_over
GC content 0.37
exon number 1
gene id XLOC_031282
representative False

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 38771779 ~ 38777852 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GAATTCCAAAGGTGTACTGGTGTTCCACAAGAATCGGTTTTTATGTCCCAGCTGGACAAATACACTCCAAAACTTCTTGACCTGTTTAGTGCGAAGGGTGCAGCGACTAGTGAAAACATCAATTGGAGTTATTGGAACTGATACAGGTAAGGCAAACATGGTAACAATGTGGCTGATGCATGTTTATGCAATTAGTACTTTATTTACTCATCTTGCCTAATAGGTGAATAGTGCAAAACAAAGTCATTAATTTTAagggtaaatataaaaaaagcgtgtgtgtgtgtgtctctgtgtctgtgtatatgtatgtgcatatatatatatatatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagatagagttgaACTCTGTTGAATAGGTTGTACAGAACCACACTGATAATGACATTTTACGTTTGTAGTTATATTGCCTgcaatattcagtttttttattattcacttaCCAACTATAGGATTCAAGTACCTCTGTGGTGAGGAAGAGAGATGTGGCTCTGAGATGCCTCATTGAATACATGGGAGAGAGTGGGCAAAAGCTGATCTCTGACTACTATGCAAGTATTGTTTAAAAAGCATAGTTTGACTTTTTTGGGAAAGGCACTCATTCCTCAGATGTCTGACTGAGTTATAGTACAAAGCTGGAGCCCTGTCAAATGATCAAAACATGCCTACAAACACATAAATGAATATGCAGGAACCAGGGTCCCAAGTTAACCTTTTGGACTTTTAGTTGCTTGTagacttgatttaaaaaataatgtcatttttaactgcagtttcacaaaaGTAAAATCCTTGTTTtacattatgcaaaaatcataatCATCTGACAATATAACTGTCAGAATGGCATTTTCAGTTTTGCCACTTATTGTTCTGTTTATTCTCATACAGGGAAAAACAGAGAGCAGTGTCTATGAAGACTTGAAAATGCGCAATATGCAGATATATGTCTGCCGTGTTCCAGATGTGGTGGGCATCATCATTGAGGGCATCCCTGTGCTTACTCGTCTTGGAAACCACTCCAGGGCTATGAACTTGCAGTATCCACCACAACTCAGCAAAACATTTCAGGTGTTTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062051 lncRNA downstream 138628 38614868 ~ 38633719 (-) True XLOC_031276
TCONS_00062052 lncRNA downstream 149376 38620957 ~ 38622971 (-) True XLOC_031277
TCONS_00060719 lncRNA downstream 516603 38250044 ~ 38255744 (-) True XLOC_031269
TCONS_00062050 lncRNA downstream 516647 38250044 ~ 38255700 (-) False XLOC_031269
TCONS_00061542 lncRNA downstream 665548 38105452 ~ 38106799 (-) True XLOC_031262
TCONS_00062054 lncRNA upstream 17246 38790732 ~ 38791845 (-) True XLOC_031284
TCONS_00062055 lncRNA upstream 268568 39042054 ~ 39045354 (-) True XLOC_031288
TCONS_00062056 lncRNA upstream 1107172 39880658 ~ 39881073 (-) True XLOC_031294
TCONS_00062057 lncRNA upstream 1209202 39982688 ~ 39985497 (-) True XLOC_031295
TCONS_00062058 lncRNA upstream 1454802 40228288 ~ 40230908 (-) True XLOC_031299
TCONS_00060737 mRNA downstream 9933 38732861 ~ 38762414 (-) True XLOC_031281
TCONS_00060735 mRNA downstream 60841 38686046 ~ 38711506 (-) True XLOC_031279
TCONS_00060733 mRNA downstream 126994 38641951 ~ 38645353 (-) False XLOC_031278
TCONS_00060734 mRNA downstream 127055 38644385 ~ 38645292 (-) True XLOC_031278
TCONS_00060732 mRNA downstream 129159 38641933 ~ 38643188 (-) False XLOC_031278
TCONS_00060740 mRNA upstream 12995 38786481 ~ 38824466 (-) False XLOC_031283
TCONS_00060741 mRNA upstream 13770 38787256 ~ 38820046 (-) False XLOC_031283
TCONS_00060746 mRNA upstream 381131 39154617 ~ 39171302 (-) True XLOC_031289
TCONS_00060748 mRNA upstream 612739 39386225 ~ 39474235 (-) True XLOC_031291
TCONS_00060749 mRNA upstream 906281 39679767 ~ 39698224 (-) False XLOC_031292
TCONS_00060736 other downstream 66516 38697496 ~ 38705831 (-) True XLOC_031280
TCONS_00060729 other downstream 265699 38490346 ~ 38506648 (-) True XLOC_031273
TCONS_00060704 other downstream 734130 38035337 ~ 38038217 (-) True XLOC_031259
TCONS_00060699 other downstream 808584 37948854 ~ 37963763 (-) False XLOC_031257
TCONS_00060700 other downstream 812368 37953336 ~ 37959979 (-) True XLOC_031257
TCONS_00060742 other upstream 24718 38798204 ~ 38798318 (-) True XLOC_031285
TCONS_00060743 other upstream 40678 38814164 ~ 38824346 (-) True XLOC_031283
TCONS_00060744 other upstream 119136 38892622 ~ 38892759 (-) True XLOC_031286
TCONS_00060745 other upstream 256325 39029811 ~ 39029925 (-) True XLOC_031287
TCONS_00060747 other upstream 551282 39324768 ~ 39324884 (-) True XLOC_031290

Expression Profile

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