RNA id: TCONS_00062055


Basic Information

Item Value
RNA id TCONS_00062055
length 939
lncRNA type antisense_over
GC content 0.41
exon number 3
gene id XLOC_031288
representative True

Chromosome Information

Item Value
chromosome id NC_007116.7
NCBI id CM002889.2
chromosome length 72500376
location 39042054 ~ 39045354 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAATACAAACACAGAGTATAATTGGAAATCATTTCCCATTCAAAACGGCCGAGGAGTGTTTCCCACTGAGAGAAGTGGTCATTGTGGGATAACTTGAATGCTTCGATACAGTGAAGGTGAAGTCATCGGAGTGAATCTCGTCTTCACTGGTGTGCACATACTGAATGCTGCGAGAGGCCAGGTCAGCCTGGGTAAACGAGCTGATCCGTGTTCCTGCAACAACATCACATATTGTGCAACTCTCCAGGTCAACTGAAATTGATGAATAAAACATGCGCTGCTCCGGAAATCCCATTGAGTGCAATCCATGAAACACCAAGAGGGACAGAGcggaaaataaaaactgctcttCGCCCATGAAACTACCTTATCTGACACCTTGATAGAGATCTATAGGCAGGTTCCCAACTAATGAGTTCTGCCATGAGTTCTGTAGGTCATGAACATTGCCTGGCAATTGTGGCCAGCTTTTATAAATGCACTAGGACCacaaactataaatatatattatgatcTTTAACGCTCTAGAGATTAAATCTTCAATAGAGAGCAGAATAGCAATGATGTTATGCTTGTGCATGTAGGTGTTTTCTTGTATATGACAGATTTGTGAGTCTTGGAATTATGGCTATATGTAATTTTGAGTGAAACTTCCCCAGTGACCCGGCAGCCCGACATTTACAGCACATCTACAGAAGTTGCCTTTAAATAATGATGTAAAGTCATCTGCCACCATTATAAATACCCCACAGATCAACTTAAATGGCTCTCTACACACTACAGACATGCTTTCAAAGCATTGTCTGCAGAGCTACAATGTCTCTGTATCCAAGTTACACTATAAAATATTAGCTGCAAATGAAAAGTACATAACGGCACTAAAACTACTTAAGGGGGCTacatcattttaaatgtgtaaccaGTGCATGCATACCTGAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062054 lncRNA downstream 250209 38790732 ~ 38791845 (-) True XLOC_031284
TCONS_00060739 lncRNA downstream 264262 38772347 ~ 38777792 (-) True XLOC_031282
TCONS_00062053 lncRNA downstream 268568 38772347 ~ 38773486 (-) False XLOC_031282
TCONS_00062051 lncRNA downstream 408335 38614868 ~ 38633719 (-) True XLOC_031276
TCONS_00062052 lncRNA downstream 419083 38620957 ~ 38622971 (-) True XLOC_031277
TCONS_00062056 lncRNA upstream 835304 39880658 ~ 39881073 (-) True XLOC_031294
TCONS_00062057 lncRNA upstream 937334 39982688 ~ 39985497 (-) True XLOC_031295
TCONS_00062058 lncRNA upstream 1182934 40228288 ~ 40230908 (-) True XLOC_031299
TCONS_00060768 lncRNA upstream 1511878 40557232 ~ 40713887 (-) False XLOC_031304
TCONS_00062059 lncRNA upstream 1539464 40584818 ~ 40594989 (-) False XLOC_031304
TCONS_00060740 mRNA downstream 217588 38786481 ~ 38824466 (-) False XLOC_031283
TCONS_00060741 mRNA downstream 222008 38787256 ~ 38820046 (-) False XLOC_031283
TCONS_00060738 mRNA downstream 264202 38771779 ~ 38777852 (-) False XLOC_031282
TCONS_00060737 mRNA downstream 279640 38732861 ~ 38762414 (-) True XLOC_031281
TCONS_00060735 mRNA downstream 330548 38686046 ~ 38711506 (-) True XLOC_031279
TCONS_00060746 mRNA upstream 109263 39154617 ~ 39171302 (-) True XLOC_031289
TCONS_00060748 mRNA upstream 340871 39386225 ~ 39474235 (-) True XLOC_031291
TCONS_00060749 mRNA upstream 634413 39679767 ~ 39698224 (-) False XLOC_031292
TCONS_00060750 mRNA upstream 634413 39679767 ~ 39702345 (-) True XLOC_031292
TCONS_00060752 mRNA upstream 660991 39706345 ~ 39805874 (-) False XLOC_031293
TCONS_00060745 other downstream 12129 39029811 ~ 39029925 (-) True XLOC_031287
TCONS_00060744 other downstream 149295 38892622 ~ 38892759 (-) True XLOC_031286
TCONS_00060743 other downstream 217708 38814164 ~ 38824346 (-) True XLOC_031283
TCONS_00060742 other downstream 243736 38798204 ~ 38798318 (-) True XLOC_031285
TCONS_00060736 other downstream 336223 38697496 ~ 38705831 (-) True XLOC_031280
TCONS_00060747 other upstream 279414 39324768 ~ 39324884 (-) True XLOC_031290
TCONS_00060755 other upstream 731317 39776671 ~ 39805606 (-) True XLOC_031293
TCONS_00060757 other upstream 936203 39981557 ~ 39987192 (-) False XLOC_031295
TCONS_00060777 other upstream 1958794 41004148 ~ 41004262 (-) True XLOC_031309
TCONS_00060783 other upstream 2079401 41124755 ~ 41142766 (-) False XLOC_031311

Expression Profile

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