RNA id: TCONS_00000054


Basic Information

Item Value
RNA id TCONS_00000054
length 1261
RNA type mRNA
GC content 0.57
exon number 10
gene id XLOC_000023
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 532766 ~ 591331 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAACTCGCTTCCCCTGATCGCACGGAATGTTTTTATCGCTGCACTCGGAAGCAGCGCAAGCATGTCGCCGATCTCTGACAGTTAGCGACTTGATTTTTCTACGTTTATTTGTGTAGTGTATGTTTATTCTGTTAACATTGTGCAGGAAAAGTGAGCTGTAGATCATGGCTACCGCTCGGACTGTCGGTCAGATGCTTCAGCGCCgTATGGTGTCCAGCGCTGCAGCTGCTCCTCGTCTGTCGTCTGCAGCGGTTCTGGCTCAGCGCAGTGCTCAGTTCTCCAGAGAGCAGCTCCGCCAGCGAGCGCTGCAGCCGCGGGTGGAGAAGGTGGAGGTGCAGCTGCAGGGGCCGGGTCTGCAGGGGACGCTGCTGGTGATGAACAGAGGCCTGTCTACACCATACAGCTGCGCACGCCACCTGTCCGAGTGGCATGTGAACAGCAGTGCGCTGGCACTGGTGGACGGTCAGCCGTGGCACATGCACAAACCCCTGACCCGCTCCTGTGAGCTCACACTGCTGACCTTCAGAGATGCAGACCCACAGACACTCAACCAGgcgtACTGGCGCTCCTGTGCGGCTCTTCTGGGTCTCGTCCTGGAGTCAGCCTTTAAGGATCAGTTCAGTGTCGAGCTGCTCAAGACTCCTGAAGTGCCAGTGACGGCCGGTGCTTTCTGCTGTGATCTGCTTCTGGATCCGCTTCTGGACTCCTGGAAGCCCACAGAGGAGAATCTGCGCAGTCTGACGCGTGACGCGCTGCAGATGATCAGCAGAGATCTGCCCTGGGAGCCGCTGGAGGTTTCAGCTTCTCTGGCCCTGGAGATCTTCTCTCAGAGCaggtgtaaACAGGAGGAAGTTGAAGAAGCAGCGGCTCAGAGTCAGAACGGGACGGTGACACTATACAGgtgtggAGATCATGTGACGCTGAGCTCCGCCCCACTGGTGTCCCGCACGGGTCTTTGCTCTCAGTTTGAGGTCACGTCGATACACACACTCTCAGAACACACACGCGGAGTCCAGCGCAGAGCTCAGGGGCTCTCACTGCCCGTCAACCTTACTGCTCATCATACAGTCTGGAGGAAGCTGCGGAAAAGAGCAGAGAGActgGTGGAGCTTCCCTCATCTTCAACAGAGGCTCCTCCTTTCAACACAGAGACTCCACCTGCTGCCTCTGTGACTCCACCCCCTCTACCATAATCCCCGCCCCCTCTCTCAGCATTCAGTGTTTGTATGATATTGTTGAATAAACGTGTTGACCACATGTc

Function

GO:

id name namespace
GO:0005840 ribosome cellular_component
GO:0005739 mitochondrion cellular_component
GO:0000166 nucleotide binding molecular_function

KEGG:

id description
ko03011 Ribosome

ZFIN:

id description
ZDB-GENE-030131-6520 Predicted to enable nucleotide binding activity. Predicted to be located in ribosome. Predicted to be active in mitochondrion. Orthologous to human MRPL39 (mitochondrial ribosomal protein L39).

Ensembl:

ensembl_id ENSDART00000147633

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00003003 lncRNA upstream 222080 355481 ~ 358562 (+) False XLOC_000018
TCONS_00003004 lncRNA upstream 222080 355771 ~ 358562 (+) True XLOC_000018
TCONS_00002804 lncRNA upstream 338935 237391 ~ 241707 (+) True XLOC_000015
TCONS_00002803 lncRNA upstream 343219 236400 ~ 237423 (+) False XLOC_000015
TCONS_00002802 lncRNA upstream 345109 227253 ~ 235533 (+) False XLOC_000015
TCONS_00003005 lncRNA downstream 203645 794976 ~ 898180 (+) False XLOC_000026
TCONS_00003006 lncRNA downstream 203645 794976 ~ 911551 (+) True XLOC_000026
TCONS_00003007 lncRNA downstream 424481 1015812 ~ 1033638 (+) False XLOC_000028
TCONS_00002805 lncRNA downstream 424493 1015824 ~ 1023334 (+) True XLOC_000028
TCONS_00003008 lncRNA downstream 723958 1315289 ~ 1321953 (+) False XLOC_000030
TCONS_00000050 mRNA upstream 31121 532766 ~ 549521 (+) False XLOC_000023
TCONS_00000049 mRNA upstream 48213 524821 ~ 532429 (+) True XLOC_000022
TCONS_00000048 mRNA upstream 49707 524388 ~ 530935 (+) False XLOC_000022
TCONS_00000046 mRNA upstream 62566 514001 ~ 518076 (+) False XLOC_000021
TCONS_00000045 mRNA upstream 62569 513986 ~ 518073 (+) False XLOC_000021
TCONS_00000056 mRNA downstream 3253 594584 ~ 603397 (+) False XLOC_000025
TCONS_00000057 mRNA downstream 3405 594736 ~ 608055 (+) False XLOC_000025
TCONS_00000058 mRNA downstream 12796 604127 ~ 608247 (+) True XLOC_000025
TCONS_00000059 mRNA downstream 370276 961607 ~ 970951 (+) True XLOC_000027
TCONS_00000062 mRNA downstream 1008648 1599979 ~ 1614500 (+) True XLOC_000033
TCONS_00000053 other upstream 4121 576444 ~ 576521 (+) True XLOC_000024
TCONS_00000052 other upstream 34425 537589 ~ 546217 (+) False XLOC_000023
TCONS_00000047 other upstream 65320 514013 ~ 515322 (+) True XLOC_000021
TCONS_00000036 other upstream 286748 260040 ~ 293894 (+) False XLOC_000017
TCONS_00000003 other upstream 567385 12129 ~ 13257 (+) False XLOC_000001
TCONS_00000060 other downstream 627360 1218691 ~ 1218805 (+) True XLOC_000029
TCONS_00000061 other downstream 984152 1575483 ~ 1575563 (+) True XLOC_000032
TCONS_00000067 other downstream 1120822 1712153 ~ 1718527 (+) False XLOC_000036
TCONS_00000068 other downstream 1126366 1717697 ~ 1723157 (+) False XLOC_000036
TCONS_00000069 other downstream 1127280 1718611 ~ 1793371 (+) False XLOC_000036

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000299_05739937_05770480.mRNA True 2139 mRNA 0.53 15 CI01000299 5739808 ~ 5770807 (-)