RNA id: TCONS_00062476


Basic Information

Item Value
RNA id TCONS_00062476
length 752
lncRNA type retained_intron
GC content 0.35
exon number 2
gene id XLOC_031907
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 12986853 ~ 12993502 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTCCTCACACAACAAAGATGGCGGCGCGCTGTTGGAGCCTGATGAGGTCGACATTGCAAGGGTTGTATCAGCTGTCAAACAGGACGTTGTGGCGAGAATCTCACTTGGAGCAGAGAGTTTGTCTCAGACTGCAGgagaatgttttacacagcagagccTTACATTACGGACATCATACTTTACAAACCATCACCAAGACGGAGCCTCCAAGAGTTATGAACACACAGAAATCAGCTGAACctgaaaataaaaccaaccaacaaaagaaagaagaggaagaggaggaggaggaagaagataACAGGCCTGAATATATGCCCAAAGGAAAGGCCAAAAATCCCATGATGAAGATTGGATATGCATGGTTAGTATAGCTCATATCTGCCTTCTGCTTCAGACAACAAAAGCAGGGAAACGACAGTGCTGAAAATCTAGAGATGCAGTCAGATTCAGAGATTAACCTTTCTATCAAGGGTCAGTATTTGCTCCTGTAATTAGATACTATTATTGCTTTACTATAATTAAATCATAATGTGTTATCTATTGTTAAATATTATCATTacctaaaaaaaaactacataattattaaaatgacaatactgtaaactttataacaaacatttttaaagaaactcatTATAGTGTAGGGCTGCATTATTatgataaaaacattatttactatTCCTGaggaaattaattttaattgttaatgtttataataatgatatatgtaaaatattttttatctttg

Function

GO:

id name namespace
GO:0008150 biological_process biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0003674 molecular_function molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-060810-58 Predicted to be located in membrane. Predicted to be integral component of membrane.

Ensembl:

ensembl_id ENSDART00000154743

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062447 lncRNA upstream 1588112 11397653 ~ 11398744 (+) True XLOC_031893
TCONS_00064819 lncRNA upstream 1978426 10988645 ~ 11008430 (+) False XLOC_031888
TCONS_00062435 lncRNA upstream 1978426 10988764 ~ 11008430 (+) True XLOC_031888
TCONS_00064607 lncRNA upstream 2055766 10930890 ~ 10931090 (+) True XLOC_031887
TCONS_00064818 lncRNA upstream 2096632 10889061 ~ 10890224 (+) True XLOC_031885
TCONS_00062479 lncRNA downstream 37170 13027864 ~ 13031519 (+) True XLOC_031908
TCONS_00062487 lncRNA downstream 126847 13117541 ~ 13123424 (+) False XLOC_031912
TCONS_00064820 lncRNA downstream 269388 13260082 ~ 13267143 (+) True XLOC_031915
TCONS_00064821 lncRNA downstream 353981 13344675 ~ 13348236 (+) True XLOC_031917
TCONS_00064608 lncRNA downstream 789936 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00062474 mRNA upstream 1466 12968101 ~ 12985390 (+) True XLOC_031906
TCONS_00062472 mRNA upstream 63129 12922002 ~ 12923727 (+) False XLOC_031905
TCONS_00062473 mRNA upstream 63512 12922118 ~ 12923344 (+) True XLOC_031905
TCONS_00062470 mRNA upstream 121029 12853655 ~ 12865827 (+) False XLOC_031904
TCONS_00062478 mRNA downstream 33754 13024448 ~ 13037815 (+) False XLOC_031908
TCONS_00062480 mRNA downstream 49257 13039951 ~ 13045541 (+) False XLOC_031909
TCONS_00062482 mRNA downstream 55191 13045885 ~ 13056726 (+) False XLOC_031910
TCONS_00062483 mRNA downstream 56026 13046720 ~ 13058979 (+) True XLOC_031910
TCONS_00062484 mRNA downstream 92452 13083146 ~ 13091856 (+) True XLOC_031911
TCONS_00062453 other upstream 1212124 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 1578719 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062436 other upstream 1968324 11018416 ~ 11018532 (+) True XLOC_031889
TCONS_00062432 other upstream 2119715 10867024 ~ 10867141 (+) True XLOC_031883
TCONS_00062404 other upstream 3078094 9901124 ~ 9908762 (+) False XLOC_031864
TCONS_00062481 other downstream 49296 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062509 other downstream 990251 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062521 other downstream 2553361 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062540 other downstream 4060345 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 4214498 17205192 ~ 17205289 (+) True XLOC_031958

Expression Profile

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