RNA id: TCONS_00062479


Basic Information

Item Value
RNA id TCONS_00062479
length 432
lncRNA type retained_intron
GC content 0.47
exon number 4
gene id XLOC_031908
representative True

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13024448 ~ 13037815 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCACGGGAACGGTATCCCACTGGCCACTCCAGAGCTCAGCCGACTATAATAAATGGCATCAAGATCATACCGGTTCCCATCTTATTAGACAACTACAGCTATGTGGTTATCGACACTGCATCAAATACGGCTGTTGTGGTCGATCCCGCTGACCCTCAGCCTGTTCAGGCATGCCTAGAGGCAGAGGGGGTGGCTTTACAAGCTGTTCTCTGCACACATAAGCACTGGGACCACAGTGGAGGAAACAGGGCTTTAAAAAGACGCTACAGCTCCTGTCGAGTGTATGGGAACGCAATGGACAACATTCCAGGCCTCACACAGTCAGTACCTGCTGTTCTGCCATCCCATCATGTATCATTTGAACTGTTCAAACGAATATTTTACATTGTTTAGATGCCATTCCATATTCTGCTctcacaaaataaacatttt

Function

GO:

id name namespace
GO:0019243 methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione biological_process
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004416 hydroxyacylglutathione hydrolase activity molecular_function

KEGG:

id description
ko04131 Membrane trafficking

ZFIN:

id description
ZDB-GENE-050208-278 Predicted to enable hydroxyacylglutathione hydrolase activity and metal ion binding activity. Predicted to act upstream of or within methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione. Predicted to be located in membrane. Predicted to be integral component of membrane. Human ortholog(s) of this gene implicated in paroxysmal nonkinesigenic dyskinesia 1. Orthologous to human PNKD (PNKD metallo-beta-lactamase domain containing).

Ensembl:

ensembl_id ENSDART00000149572

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062477 lncRNA upstream 34362 12986853 ~ 12993502 (+) False XLOC_031907
TCONS_00062476 lncRNA upstream 37170 12986856 ~ 12990694 (+) True XLOC_031907
TCONS_00062447 lncRNA upstream 1629120 11397653 ~ 11398744 (+) True XLOC_031893
TCONS_00064819 lncRNA upstream 2019434 10988645 ~ 11008430 (+) False XLOC_031888
TCONS_00062435 lncRNA upstream 2019434 10988764 ~ 11008430 (+) True XLOC_031888
TCONS_00062487 lncRNA downstream 86022 13117541 ~ 13123424 (+) False XLOC_031912
TCONS_00064820 lncRNA downstream 228563 13260082 ~ 13267143 (+) True XLOC_031915
TCONS_00064821 lncRNA downstream 313156 13344675 ~ 13348236 (+) True XLOC_031917
TCONS_00064608 lncRNA downstream 749111 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00064822 lncRNA downstream 756398 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00062475 mRNA upstream 34365 12986853 ~ 12993499 (+) False XLOC_031907
TCONS_00062474 mRNA upstream 42474 12968101 ~ 12985390 (+) True XLOC_031906
TCONS_00062472 mRNA upstream 104137 12922002 ~ 12923727 (+) False XLOC_031905
TCONS_00062473 mRNA upstream 104520 12922118 ~ 12923344 (+) True XLOC_031905
TCONS_00062470 mRNA upstream 162037 12853655 ~ 12865827 (+) False XLOC_031904
TCONS_00062480 mRNA downstream 8432 13039951 ~ 13045541 (+) False XLOC_031909
TCONS_00062482 mRNA downstream 14366 13045885 ~ 13056726 (+) False XLOC_031910
TCONS_00062483 mRNA downstream 15201 13046720 ~ 13058979 (+) True XLOC_031910
TCONS_00062484 mRNA downstream 51627 13083146 ~ 13091856 (+) True XLOC_031911
TCONS_00062485 mRNA downstream 65393 13096912 ~ 13123392 (+) False XLOC_031912
TCONS_00062453 other upstream 1253132 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 1619727 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062436 other upstream 2009332 11018416 ~ 11018532 (+) True XLOC_031889
TCONS_00062432 other upstream 2160723 10867024 ~ 10867141 (+) True XLOC_031883
TCONS_00062404 other upstream 3119102 9901124 ~ 9908762 (+) False XLOC_031864
TCONS_00062481 other downstream 8471 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062509 other downstream 949426 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062521 other downstream 2512536 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062540 other downstream 4019520 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 4173673 17205192 ~ 17205289 (+) True XLOC_031958

Expression Profile

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