Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00062481 |
| length | 652 |
| RNA type | nonsense_mediated_decay |
| GC content | 0.41 |
| exon number | 5 |
| gene id | XLOC_031909 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 13039951 ~ 13045541 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0044782 | cilium organization | biological_process |
| GO:0030030 | cell projection organization | biological_process |
| GO:0060271 | cilium assembly | biological_process |
| GO:0030041 | actin filament polymerization | biological_process |
| GO:0061371 | determination of heart left/right asymmetry | biological_process |
| GO:0005856 | cytoskeleton | cellular_component |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0015629 | actin cytoskeleton | cellular_component |
| GO:0005634 | nucleus | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0005737 | cytoplasm | cellular_component |
| id | description |
|---|---|
| ZDB-GENE-060929-1170 | Involved in actin filament polymerization and cilium organization. Acts upstream of or within cilium assembly and determination of heart left/right asymmetry. Predicted to be located in several cellular components, including actin cytoskeleton; nucleus; and plasma membrane. Is expressed in caudal fin; nervous system; and pleuroperitoneal region. Human ortholog(s) of this gene implicated in spermatogenic failure. Orthologous to human CATIP (ciliogenesis associated TTC17 interacting protein). |
| ensembl_id | ENSDART00000157372 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00062479 | lncRNA | upstream | 8471 | 13027864 ~ 13031519 (+) | True | XLOC_031908 |
| TCONS_00062477 | lncRNA | upstream | 46488 | 12986853 ~ 12993502 (+) | False | XLOC_031907 |
| TCONS_00062476 | lncRNA | upstream | 49296 | 12986856 ~ 12990694 (+) | True | XLOC_031907 |
| TCONS_00062447 | lncRNA | upstream | 1641246 | 11397653 ~ 11398744 (+) | True | XLOC_031893 |
| TCONS_00064819 | lncRNA | upstream | 2031560 | 10988645 ~ 11008430 (+) | False | XLOC_031888 |
| TCONS_00062487 | lncRNA | downstream | 72040 | 13117541 ~ 13123424 (+) | False | XLOC_031912 |
| TCONS_00064820 | lncRNA | downstream | 214581 | 13260082 ~ 13267143 (+) | True | XLOC_031915 |
| TCONS_00064821 | lncRNA | downstream | 299174 | 13344675 ~ 13348236 (+) | True | XLOC_031917 |
| TCONS_00064608 | lncRNA | downstream | 735129 | 13780630 ~ 13788649 (+) | False | XLOC_031922 |
| TCONS_00064822 | lncRNA | downstream | 742416 | 13787917 ~ 13791320 (+) | False | XLOC_031922 |
| TCONS_00062478 | mRNA | upstream | 2175 | 13024448 ~ 13037815 (+) | False | XLOC_031908 |
| TCONS_00062475 | mRNA | upstream | 46491 | 12986853 ~ 12993499 (+) | False | XLOC_031907 |
| TCONS_00062474 | mRNA | upstream | 54600 | 12968101 ~ 12985390 (+) | True | XLOC_031906 |
| TCONS_00062472 | mRNA | upstream | 116263 | 12922002 ~ 12923727 (+) | False | XLOC_031905 |
| TCONS_00062473 | mRNA | upstream | 116646 | 12922118 ~ 12923344 (+) | True | XLOC_031905 |
| TCONS_00062482 | mRNA | downstream | 384 | 13045885 ~ 13056726 (+) | False | XLOC_031910 |
| TCONS_00062483 | mRNA | downstream | 1219 | 13046720 ~ 13058979 (+) | True | XLOC_031910 |
| TCONS_00062484 | mRNA | downstream | 37645 | 13083146 ~ 13091856 (+) | True | XLOC_031911 |
| TCONS_00062485 | mRNA | downstream | 51411 | 13096912 ~ 13123392 (+) | False | XLOC_031912 |
| TCONS_00062486 | mRNA | downstream | 71592 | 13117093 ~ 13121076 (+) | False | XLOC_031912 |
| TCONS_00062453 | other | upstream | 1265258 | 11774617 ~ 11774732 (+) | True | XLOC_031897 |
| TCONS_00062446 | other | upstream | 1631853 | 11397641 ~ 11408137 (+) | False | XLOC_031893 |
| TCONS_00062436 | other | upstream | 2021458 | 11018416 ~ 11018532 (+) | True | XLOC_031889 |
| TCONS_00062432 | other | upstream | 2172849 | 10867024 ~ 10867141 (+) | True | XLOC_031883 |
| TCONS_00062404 | other | upstream | 3131228 | 9901124 ~ 9908762 (+) | False | XLOC_031864 |
| TCONS_00062509 | other | downstream | 935444 | 13980945 ~ 13981092 (+) | True | XLOC_031925 |
| TCONS_00062521 | other | downstream | 2498554 | 15544055 ~ 15544170 (+) | True | XLOC_031935 |
| TCONS_00062540 | other | downstream | 4005538 | 17051039 ~ 17051135 (+) | True | XLOC_031953 |
| TCONS_00062544 | other | downstream | 4159691 | 17205192 ~ 17205289 (+) | True | XLOC_031958 |
| TCONS_00062547 | other | downstream | 4272056 | 17317557 ~ 17317653 (+) | True | XLOC_031961 |
