Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00062487 |
| length | 1121 |
| lncRNA type | retained_intron |
| GC content | 0.43 |
| exon number | 6 |
| gene id | XLOC_031912 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007117.7 |
| NCBI id | CM002890.2 |
| chromosome length | 60270059 |
| location | 13096912 ~ 13133917 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0099536 | synaptic signaling | biological_process |
| GO:0006508 | proteolysis | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016020 | membrane | cellular_component |
| GO:0004197 | cysteine-type endopeptidase activity | molecular_function |
| GO:0046872 | metal ion binding | molecular_function |
| GO:0008234 | cysteine-type peptidase activity | molecular_function |
| GO:0008270 | zinc ion binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-070124-2 | Predicted to enable cysteine-type endopeptidase activity and zinc ion binding activity. Predicted to be involved in synaptic signaling. Predicted to act upstream of or within proteolysis. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human DYTN (dystrotelin). |
| ensembl_id | ENSDART00000109036 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00062479 | lncRNA | upstream | 86022 | 13027864 ~ 13031519 (+) | True | XLOC_031908 |
| TCONS_00062477 | lncRNA | upstream | 124039 | 12986853 ~ 12993502 (+) | False | XLOC_031907 |
| TCONS_00062476 | lncRNA | upstream | 126847 | 12986856 ~ 12990694 (+) | True | XLOC_031907 |
| TCONS_00062447 | lncRNA | upstream | 1718797 | 11397653 ~ 11398744 (+) | True | XLOC_031893 |
| TCONS_00064819 | lncRNA | upstream | 2109111 | 10988645 ~ 11008430 (+) | False | XLOC_031888 |
| TCONS_00064820 | lncRNA | downstream | 136658 | 13260082 ~ 13267143 (+) | True | XLOC_031915 |
| TCONS_00064821 | lncRNA | downstream | 221251 | 13344675 ~ 13348236 (+) | True | XLOC_031917 |
| TCONS_00064608 | lncRNA | downstream | 657206 | 13780630 ~ 13788649 (+) | False | XLOC_031922 |
| TCONS_00064822 | lncRNA | downstream | 664493 | 13787917 ~ 13791320 (+) | False | XLOC_031922 |
| TCONS_00062512 | lncRNA | downstream | 1827047 | 14950471 ~ 14957388 (+) | True | XLOC_031927 |
| TCONS_00062484 | mRNA | upstream | 25685 | 13083146 ~ 13091856 (+) | True | XLOC_031911 |
| TCONS_00062483 | mRNA | upstream | 58562 | 13046720 ~ 13058979 (+) | True | XLOC_031910 |
| TCONS_00062482 | mRNA | upstream | 60815 | 13045885 ~ 13056726 (+) | False | XLOC_031910 |
| TCONS_00062480 | mRNA | upstream | 72000 | 13039951 ~ 13045541 (+) | False | XLOC_031909 |
| TCONS_00062478 | mRNA | upstream | 79726 | 13024448 ~ 13037815 (+) | False | XLOC_031908 |
| TCONS_00062489 | mRNA | downstream | 77934 | 13201358 ~ 13204969 (+) | True | XLOC_031913 |
| TCONS_00062490 | mRNA | downstream | 83092 | 13206516 ~ 13231951 (+) | False | XLOC_031914 |
| TCONS_00062492 | mRNA | downstream | 83715 | 13207139 ~ 13235516 (+) | False | XLOC_031914 |
| TCONS_00062491 | mRNA | downstream | 83715 | 13207139 ~ 13235516 (+) | False | XLOC_031914 |
| TCONS_00062493 | mRNA | downstream | 109510 | 13232934 ~ 13254851 (+) | True | XLOC_031914 |
| TCONS_00062481 | other | upstream | 72040 | 13039990 ~ 13045501 (+) | True | XLOC_031909 |
| TCONS_00062453 | other | upstream | 1342809 | 11774617 ~ 11774732 (+) | True | XLOC_031897 |
| TCONS_00062446 | other | upstream | 1709404 | 11397641 ~ 11408137 (+) | False | XLOC_031893 |
| TCONS_00062436 | other | upstream | 2099009 | 11018416 ~ 11018532 (+) | True | XLOC_031889 |
| TCONS_00062432 | other | upstream | 2250400 | 10867024 ~ 10867141 (+) | True | XLOC_031883 |
| TCONS_00062509 | other | downstream | 857521 | 13980945 ~ 13981092 (+) | True | XLOC_031925 |
| TCONS_00062521 | other | downstream | 2420631 | 15544055 ~ 15544170 (+) | True | XLOC_031935 |
| TCONS_00062540 | other | downstream | 3927615 | 17051039 ~ 17051135 (+) | True | XLOC_031953 |
| TCONS_00062544 | other | downstream | 4081768 | 17205192 ~ 17205289 (+) | True | XLOC_031958 |
| TCONS_00062547 | other | downstream | 4194133 | 17317557 ~ 17317653 (+) | True | XLOC_031961 |
