RNA id: TCONS_00062491


Basic Information

Item Value
RNA id TCONS_00062491
length 6141
RNA type mRNA
GC content 0.44
exon number 17
gene id XLOC_031914
representative False

Chromosome Information

Item Value
chromosome id NC_007117.7
NCBI id CM002890.2
chromosome length 60270059
location 13206516 ~ 13254851 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGACATGTTGCGTTTGCCAGCTGTAAGTCGGGCTTTGGCAGCTCATTCCAAGGGCTCCATTGCCACAACCAACAATGTACGGACCTCCGTCCGGGCTGCGAGCAATATGgttgaagtgtttgtagatgGTAAACCTGTCATGGTGGAGCCAGGAACCACTGTACTACAGGCTTGTGAGAAAGTTGGTGTGCAGATTCCTCGTTTCTGCTATCATGATCGTCTGTCAGTGGCCGGTAACTGCCGTATGTGTCTGGTTGAGATCGAAAGAGCGCCAAAGGTAATATGCGTCATCGAACGCACTATGAGTATGACATTATTGCTCGCACATATTCAAGATTGTCATCAAAATACATTGCTTTCTCCATTTGTTCTTCATCAACAGCCTGTTGCTGCATGTGCAATGCCAGTCATGAAAGGATGGAACATTTTGACCAACTCAGAGAAAACGCGTAAAGCCAGAGAGGGAGTCATGGAGTTCTTGCTTGCCAACCACCCTCTTGACTGTCCAATCTGTGATCAGGGAGGAGAGTGTGATCTGCAGGACCAGTCGATGATGTTCGGCACAGACAGAAGCCGCTTTACTGAAGGCAAGAGGGCAGTGGAAGACAAGAACATCGGGCCGCTCATCAAAACAATCATGACTCGCTGTATACAGTGCACCCGTTGTGTTCGTTTTGCCAGTGAAGTTGCTGGAGTGGAGGATCTGGGAACCACAGGACGTGGTAACGACATGCAGATTGGTACCTACGTGGAGAAGATGTTCATGTCTGAGTTGTCTGGAAACATAATCGACTTGTGTCCTGTTGGAGCACTGACATCTAAACCATATGCCTTCACTGCAAGACCCTGGGAGACCAGAAAGACCGAGTCTATCGACGTGCTGGATGCTGTTGGCTCCAACATTGTGGTGAGCACCAGAAGTGGTGAAGTCATGAGAATTCTGCCCCGCATGAATGAAGATGTCAATGAGGAATGGATATCTGACAAGACCAGGTTTGCTTATGATGGGCTGAAGAGGCAGCGTCTGACCCAGCCCATGGTAAGGGATGCTAGCGGGCAGCTGGTTTCCACCACCTGGGAAGATGTCCTTACGCGTGTGGCCGGAGCACTCCAGGGAGTTAAAGGTTCTGAGATTGGAGCTATTGCTGGTGGGATGGTGGACGCTGAGGCACTGGTGGCTCTGAAGGACCTGCTGAACAAACTGGACAGCGAGTCTCTCTGCACTGAAGAGATCTTCCCAATGGCTGGTGCTGGATCCGACCTGCGCTCCAATTACCTCTTGAACAGCCGTATCACTGGTATTGAGGAGTGTGACCTTCTGCTACTGATTGGGACAAACCCTCGTTATGAGGCTCCTCTCTTCAATGCACGTATCCGCAAGAGTTGGTTGCATAATGAGCTCCAAGTGGCCATGGTGGGTCATGATGTGGATCTGAGCTACTCTTACAACCATCTGGGTGAAACCACACAGGTTCTGCAGGACATTGCTGCTGGAACACATCCTTTCTGCAAGGACCTCGGCCAAGCCAAAAAGCCTATCGTGGTGGTGGGTAGCTCTGCTCTTCAGAGGGATGATGGGGCAGCCATCTTAAAGGCTGTGTCCACAATTGCTCAAAATGCTCGGGCCAGCAGTGGTGTTGAGGAGGGATGGAAGGTTCTCAATGTACTGCACAGGGTGGCCAGTCAAGTGGCAGCTCTGGACTTGGGTTATAAACCTGGTGTTGATGCCATTCGGAAGAATCCTCCCAAAGTGCTGTTTCTCCTGGGAGCTGATGCCGGATGCATCACCAGAGCAGACCTTCCTAAAGATAGCTTTATCGTTTACCAGGGTCACCATGGTGATGTAGGTGCACCTATTGCTGATGTCATCTTGCCTGGTGCTGCGTACACTGAAAAGTTTGGCACCTACGTCAACACAGAGGGCCGTGCACAGCAGACCAGGGTGGCAGTCACCGCTCCGGGTATGGCACGTGAGGACTGGAAGATATTGCGTGCCGTTTCTGAGtTGGTAGGAGTCACGCTGCCGTATGACACACTGGATGAGGTAAGGAGAAGGCTGGCTGAGGTTTCTCCTAACCTGGTGAGATACGATGATGTAGAGGAAGCCAATTATTTCAAACAGGCCCATGAGCTTTCAAATGCTGTGAATCAGTCATTGCTTGCAGCTCCTCTTGTCCCTCCTCAGCTCACAGTAAAGGATTTCTACATGACAGACCCCATCAGCAGAGCTTCTCCGACAATGGCCAAGTGTGTGAAAGCTGTGACGGAGGGAGCAGCAGCGGTTGATGAGCCCTCAATTTGTTAAAAACCTTTCAGGCATACCGATCTGTCCGTAGTACTACGCACAAAAGTAGTCTTCGTCACGTACATGAACGAACACAAACCTCTGTTTCTGCTTACTCAGCTCTCTGTGTTCTTGCACGGGCTGCACAAGAGCCTAATTAAAACGTGCTCATATTTAAATAGGCTTTGAACGGTGTTGTAAAGTTTTCATTCCCACGATGAATCTGAATGAGGTCTGCTTTGTTTTGGAAAGCTCTTATtatgatgaataaaaataaaatgtattatatcaaTATACTATTGTCGCCATTTACATCGCTGGGTATTCATAGTACATGCGCAGTGGAAAATCTGTTTATTTGGAGGCTAGAATGGAAATGTGAGGAGAAAATGCGTTCTATTAAATGTACTCATCCTGAAGTGGTTGCAAagctttattagtttctttattctgttgaacacaaaagaagatatgtatAACAGctaaaaaactgtaaccatttacttccatttcTTGGCTATTCTAAGTTAATGGCTACAGCCTTCATCAacacatcttattttgtgttcaacaggtgaATTTAGCAGATTTGGAACAattaaagagtgagtaaatgagtttttgggtgaactatccctttataggTACAAGTGCAGTGTAATGCAGAGAACAAACTGTAGTTGttagattatttttaattcattatattttccTAAATGGCAAATGAATGGATTTAtcatgattttgtttttaactcTAGGGCATGTAaacatttgattattaataatGTCAAACACTTTTGCATACAATTCTTCTGCAACTGTATTAAGATCATGCTGACATCACTGAAGTGGATTGATAGGGGGCAACCTTTAGACACACTTCGAAATCTCTTTGCACCCACTCTCACCTGCCTTAGAGGTTTTATCTGGAGCTTTGTCGTCTTGCTAACAGTTTGTTGAAATAGCAGCGATATAAATTTTGACACAAACTAATGTTATCTTGGCACGTGAGATTGCAGTGAATTTGAAGTTGGTGATGTCATTCCAGGCATGGATGAGACGCGTAAGAGGAGGCTGTCGGAAAAGACTTTGGGGGAGATCCCTCAAACTTAAAATCAATGTGTGCGGCTTAAATAAAACTTCTCGCCGGCCTGAACactttagacagacagacagtcaaaTGTTCAATCTGTATTGTGTGTTTGCGAGGTCTGTCATCTTTCTTAAAGCCGACAATGAACATACAAAGTTGAATTCCAAAATGGTTGCAGAGGTTGTTGTTGCACTGTCGGCTGTTGTCATGTCCCCCCAGTGCCTGTAGTTGTGCTGTAAGAAGCCTCGCATCCGATGACTAAACCAACACCCCCTTCTCCTTGTGTACGGCTAGTTTTAGTTCAATAATCGACAAAGATGTGCCTGTAGGATTCGTATAAAATTAAATGCATGCGTTAAAAAGTAATTCCGCTAGCGGAGAGTGGATAGGTAGAGGCTGAATAGCCCCGTTGAGAGCAGTAGCCGTCGACCGTATGAAAAGATCAGCGTAGCTTGTTTAGCACAGGCCGCAGCGACCGAAGGCTGAGCGGCTGCCGGGAAGCATCGGACTCAAGTGAAGGCGGAAGCCCGCTTATCGCGCACTGGAAGGCGGGTGCCTCGTTACTCGACTCGGGGGGATTCGGAAGGTTTCAGAGGCCAACGGTAACTACGAATTACGCACAAATAAAGGAACATTTGTTGACAAAATGTGTATCGGAAACCGGTTTTTCTTGTAATATTATTACAACGCAAATGCGCGAAAGTACTCCGAATTAAAGACCCTCGAAACTTTCAAACGTCTCCGGTAGTCGACGAGGCGTACGGGTATTATTGCTTATTATCGGTCCCGAGCGGCTTAGCCACTTAAATAAGTACTCCGACAAACGTTACAAAGTTTCAAAATACGGCCGAAATGTTTCTACGTCGCAACAAAGAATAGCATTCTTCCGCTTTACATTTTTTGACCGTATCTTTCCGTTAAAAGAATCAAAAGTGTTACTTCGGCGCTACACCCAACTTGCTCAATCCTTGCCTCAAAAGTAACTGATAGTGCTGCCCAAGTACATGATAGAGTAGGAGGCGGGTTGTCCACCGTCCCCTTGCGTTTTCAAAGTTGCTTTGCATGTCAAACGTATTGTACTCTGCCCAAACTCTTTTATGAGCCATCGTTTTATGATTTAGTGCTTCACCTGCTAAAAGCTCTGCTTACACCAGCTGTTTTTAAAGTGTCATTGATTGCTTAAAACAGGGGTTACTTTCCCGTCTTCCTGtcactttaatatttaatgatttgAGCTGTTTATGCCGAGTAACCTACACACTGCATGCTTTTAGGGGTGCTTTGAAACGCAGAGTTCAGATTTGTTAAATGTCGGAGGTGATTAAAATGAAAGCTCTTTTTAAATTGAATGTCACTTGACGTGGATAAGCAAGTGTGTAATTTTTATGTTCATGGTTTTATAGCTGGTCGACTTTGATTATAGAGACATAACCTTTATGGTTTTGTATACATTAGTAAGTGCTATTCAAGATCTGAGAGCTTTGATTTACTTGCTCTCTAAATGTCAACTAGCTATCATTATGTGTCTGTGTAAAgtatatccctgctgaaaaatccagcttaaaccagcctagactggttggctggttttagctggttgactagCCTAGTTTTTGAGGGGTTTTGGCCAAcgagcctggtcttagctggtcaggctggaaaatggccagctaaatccagcttaaaccaggctggccaTATAGACatagacatagctggttttggctgggctctcagcatggcaaggctggtcaagctggttttagctggtcatctctcagcctgaccagctaagaccaggctggaaatggccaaaacccctctaaaaccagcctggtcgaccaacTTAAACTAGcctaccagcctaggctggtttaagctgttttttttttagtagggaCAGTTTAGCCGAACTTCAGGATCAAGCTGGAGGATCAAGCTGGAGTTTCCTGCAATTGAGTTTAATAAAATGGATCATGTAAATTCTGGTATACACTACATGGTTTTCAAacactaaatttaatttaaagtgtagATATCACATACCTTTTGATTTTGTGAATAGTTAGAGAAACAAAGGGCACCATACGCTAAAGGAACGTTCACAGAAAGGaatatagttattataataaaatttttatataattgGCGTCAGATTTGGAATGAtctctttctccagttgattAACATAGACAGTCAGTCAGAATCCATATTGTTTTATAGAACTGATGTCCAAATTGCACAGTGTGTGTATAATAAACTGAACAATATTAAAAGTAGTAAGTTATTTTTGACTCAGAATCTTGTATGgaaaagcattattttaaaaattaactcaaatcaattaaaaatactttgaattatattaaaaatacttttgaatACTAATCATTCATGATGCGAAGCTTGAAATATGGGGTCAGCACCCATCATACATATATATTGGTGGACCTTTTGTAAATTACTCACGTTTTTGTCATAATTGTGTCTCATTCACAAGCCGTTAATTCCTCAGCTGATGTTCCGGAGAGTTCCAGCCCTGGGATGTATGAAGGCAAACACATCCACTACTCGGAGGTGGACCACAAGCCTCTGTGCTCATACAGTCCTAAGCTCTGCAAGCAGCGCAGGCTCAACGGTTATGCTTTCTGCATCCGCCATGTGCTCGAGGACCGAACTGCTCCCTTCAGGCAGTGCGAATATGTAGCCAAGTACAATAGCCAGCGCTGCACCAACCCAATACCCAAGGCTCACGAACGCAA

Function

GO:

id name namespace
GO:0042773 ATP synthesis coupled electron transport biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016020 membrane cellular_component
GO:0008137 NADH dehydrogenase (ubiquinone) activity molecular_function
GO:0009055 electron transfer activity molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0051536 iron-sulfur cluster binding molecular_function
GO:0016651 oxidoreductase activity, acting on NAD(P)H molecular_function

KEGG:

id description
ko00190 Oxidative phosphorylation
ko04723 Retrograde endocannabinoid signaling
ko04714 Thermogenesis
ko05208 Chemical carcinogenesis - reactive oxygen species
ko05010 Alzheimer disease
ko05012 Parkinson disease
ko05014 Amyotrophic lateral sclerosis
ko05016 Huntington disease
ko05020 Prion disease
ko05022 Pathways of neurodegeneration - multiple diseases
ko05415 Diabetic cardiomyopathy
ko04932 Non-alcoholic fatty liver disease

ZFIN:

id description
ZDB-GENE-070112-2072 Predicted to enable 4 iron, 4 sulfur cluster binding activity; NADH dehydrogenase (ubiquinone) activity; and metal ion binding activity. Predicted to act upstream of or within ATP synthesis coupled electron transport; DNA recombination; and DNA repair. Predicted to be located in mitochondrial inner membrane. Predicted to be active in nucleus. Orthologous to human INO80D (INO80 complex subunit D).

Ensembl:

ensembl_id ENSDART00000182182

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00062487 lncRNA upstream 83715 13117541 ~ 13123424 (+) False XLOC_031912
TCONS_00062479 lncRNA upstream 175620 13027864 ~ 13031519 (+) True XLOC_031908
TCONS_00062477 lncRNA upstream 213637 12986853 ~ 12993502 (+) False XLOC_031907
TCONS_00062476 lncRNA upstream 216445 12986856 ~ 12990694 (+) True XLOC_031907
TCONS_00062447 lncRNA upstream 1808395 11397653 ~ 11398744 (+) True XLOC_031893
TCONS_00064820 lncRNA downstream 24566 13260082 ~ 13267143 (+) True XLOC_031915
TCONS_00064821 lncRNA downstream 109159 13344675 ~ 13348236 (+) True XLOC_031917
TCONS_00064608 lncRNA downstream 545114 13780630 ~ 13788649 (+) False XLOC_031922
TCONS_00064822 lncRNA downstream 552401 13787917 ~ 13791320 (+) False XLOC_031922
TCONS_00062512 lncRNA downstream 1714955 14950471 ~ 14957388 (+) True XLOC_031927
TCONS_00062489 mRNA upstream 2170 13201358 ~ 13204969 (+) True XLOC_031913
TCONS_00062488 mRNA upstream 73222 13117598 ~ 13133917 (+) True XLOC_031912
TCONS_00062485 mRNA upstream 83747 13096912 ~ 13123392 (+) False XLOC_031912
TCONS_00062486 mRNA upstream 86063 13117093 ~ 13121076 (+) False XLOC_031912
TCONS_00062484 mRNA upstream 115283 13083146 ~ 13091856 (+) True XLOC_031911
TCONS_00062494 mRNA downstream 97617 13333133 ~ 13334222 (+) True XLOC_031916
TCONS_00062495 mRNA downstream 271325 13506841 ~ 13514230 (+) True XLOC_031918
TCONS_00062496 mRNA downstream 370894 13606410 ~ 13688991 (+) True XLOC_031919
TCONS_00062497 mRNA downstream 491328 13726844 ~ 13734269 (+) False XLOC_031920
TCONS_00062498 mRNA downstream 495006 13730522 ~ 13734490 (+) True XLOC_031920
TCONS_00062481 other upstream 161638 13039990 ~ 13045501 (+) True XLOC_031909
TCONS_00062453 other upstream 1432407 11774617 ~ 11774732 (+) True XLOC_031897
TCONS_00062446 other upstream 1799002 11397641 ~ 11408137 (+) False XLOC_031893
TCONS_00062436 other upstream 2188607 11018416 ~ 11018532 (+) True XLOC_031889
TCONS_00062432 other upstream 2339998 10867024 ~ 10867141 (+) True XLOC_031883
TCONS_00062509 other downstream 745429 13980945 ~ 13981092 (+) True XLOC_031925
TCONS_00062521 other downstream 2308539 15544055 ~ 15544170 (+) True XLOC_031935
TCONS_00062540 other downstream 3815523 17051039 ~ 17051135 (+) True XLOC_031953
TCONS_00062544 other downstream 3969676 17205192 ~ 17205289 (+) True XLOC_031958
TCONS_00062547 other downstream 4082041 17317557 ~ 17317653 (+) True XLOC_031961

Expression Profile

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